Clone Name | rbastl19c11 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009144.1| Triticum aestivum clone wl1n.pk0054.d8:fis, full insert mRNA sequence Length = 876 Score = 167 bits (84), Expect = 3e-38 Identities = 213/256 (83%) Strand = Plus / Minus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| ||||||||||||||||| || ||| ||||||||||||| | Sbjct: 575 attagaagttctccttgtggaactcaaactttgtgttcgtcttgtgggtgaagtctgctg 516 Query: 171 acaactgccgcagctgcgccacaagaacaggctcgccgcagtaaaagaccccaacgcgct 230 || ||||||| ||||| | |||||| |||||||| |||||||| || || |||||||| | Sbjct: 515 accactgccgtagctgtggcacaaggacaggctcaccgcagtagaaaactccaacgcgtt 456 Query: 231 gattctcatggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagt 290 | ||||||||||| ||||| | | ||||||||||||||||| || || || || |||| Sbjct: 455 ggttctcatggttcactgcaacatgtttgaagacgcttcgccaattgggacgcgcgaagt 396 Query: 291 gggtcttgacgctggtcccggacagaatatcgacccccttcttggcatggttgagttcct 350 | |||||||| || || || |||| || |||||||| ||||| ||||| | ||| || | Sbjct: 395 gcgtcttgacactagttccagacaagatgtcgacccctttcttcgcatgctggagctctt 336 Query: 351 ggagcatgacgatgag 366 |||||||||| ||||| Sbjct: 335 ggagcatgacaatgag 320
>gb|BT009119.1| Triticum aestivum clone wl1n.pk0005.c8:fis, full insert mRNA sequence Length = 543 Score = 119 bits (60), Expect = 7e-24 Identities = 144/172 (83%) Strand = Plus / Minus Query: 204 cgccgcagtaaaagaccccaacgcgctgattctcatggttgactgcgatgcgcttgaaga 263 |||||||||| || || || |||||||| |||| ||||||| |||||||||||| ||| Sbjct: 285 cgccgcagtagaacactccgacgcgctggttctggtggttgagcgcgatgcgcttgtaga 226 Query: 264 cgcttcgccagttaggccgggcaaagtgggtcttgacgctggtcccggacagaatatcga 323 || | ||||||||||||| ||| |||||||||||||||| ||| ||||||| | |||| Sbjct: 225 cgttgcgccagttaggcctggcgaagtgggtcttgacgcgggtgccggacaccacgtcga 166 Query: 324 cccccttcttggcatggttgagttcctggagcatgacgatgagcgcggaccg 375 | || | |||||| |||||||| |||||||||| |||||||||||||||| Sbjct: 165 cgccgtgcttggcgtggttgagcgactggagcatggcgatgagcgcggaccg 114 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Minus Query: 113 tagaaattctccttgtgaaactcaaactttgtgttggt 150 ||||| ||||||||||| ||||| ||||| |||||||| Sbjct: 376 tagaagttctccttgtggaactcgaacttggtgttggt 339
>gb|AY603975.1| Oryza sativa (indica cultivar-group) respiratory burst oxidase protein B (rbohB) mRNA, complete cds Length = 3334 Score = 115 bits (58), Expect = 1e-22 Identities = 220/274 (80%) Strand = Plus / Minus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| || ||||| ||||||| || ||| ||||||| ||||| | Sbjct: 3014 attagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctg 2955 Query: 171 acaactgccgcagctgcgccacaagaacaggctcgccgcagtaaaagaccccaacgcgct 230 ||||||||| || || | || || |||||||| || ||||| || || || ||||||| Sbjct: 2954 acaactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgct 2895 Query: 231 gattctcatggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagt 290 | ||||||||| |||| || | |||||||||||||||||| ||||| || || || | Sbjct: 2894 ggttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaat 2835 Query: 291 gggtcttgacgctggtcccggacagaatatcgacccccttcttggcatggttgagttcct 350 ||||||| || || || || |||| |||||||| |||||||| ||||| | ||||| | Sbjct: 2834 gggtcttcacactagttcccgacaagatatcgacgcccttcttcgcatgctgaagttctt 2775 Query: 351 ggagcatgacgatgagcgcggaccgagcatcgcc 384 |||||||||| ||||| || || ||||||||||| Sbjct: 2774 ggagcatgacaatgagagcagaacgagcatcgcc 2741
>dbj|AK121916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C16, full insert sequence Length = 3255 Score = 115 bits (58), Expect = 1e-22 Identities = 220/274 (80%) Strand = Plus / Minus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| || ||||| ||||||| || ||| ||||||| ||||| | Sbjct: 3087 attagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctg 3028 Query: 171 acaactgccgcagctgcgccacaagaacaggctcgccgcagtaaaagaccccaacgcgct 230 ||||||||| || || | || || |||||||| || ||||| || || || ||||||| Sbjct: 3027 acaactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgct 2968 Query: 231 gattctcatggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagt 290 | ||||||||| |||| || | |||||||||||||||||| ||||| || || || | Sbjct: 2967 ggttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaat 2908 Query: 291 gggtcttgacgctggtcccggacagaatatcgacccccttcttggcatggttgagttcct 350 ||||||| || || || || |||| |||||||| |||||||| ||||| | ||||| | Sbjct: 2907 gggtcttcacactagttcccgacaagatatcgacgcccttcttcgcatgctgaagttctt 2848 Query: 351 ggagcatgacgatgagcgcggaccgagcatcgcc 384 |||||||||| ||||| || || ||||||||||| Sbjct: 2847 ggagcatgacaatgagagcagaacgagcatcgcc 2814
>dbj|AK099714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G19, full insert sequence Length = 3731 Score = 115 bits (58), Expect = 1e-22 Identities = 220/274 (80%) Strand = Plus / Minus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| || ||||| ||||||| || ||| ||||||| ||||| | Sbjct: 3606 attagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctg 3547 Query: 171 acaactgccgcagctgcgccacaagaacaggctcgccgcagtaaaagaccccaacgcgct 230 ||||||||| || || | || || |||||||| || ||||| || || || ||||||| Sbjct: 3546 acaactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgct 3487 Query: 231 gattctcatggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagt 290 | ||||||||| |||| || | |||||||||||||||||| ||||| || || || | Sbjct: 3486 ggttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaat 3427 Query: 291 gggtcttgacgctggtcccggacagaatatcgacccccttcttggcatggttgagttcct 350 ||||||| || || || || |||| |||||||| |||||||| ||||| | ||||| | Sbjct: 3426 gggtcttcacactagttcccgacaagatatcgacgcccttcttcgcatgctgaagttctt 3367 Query: 351 ggagcatgacgatgagcgcggaccgagcatcgcc 384 |||||||||| ||||| || || ||||||||||| Sbjct: 3366 ggagcatgacaatgagagcagaacgagcatcgcc 3333
>dbj|AK065117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O12, full insert sequence Length = 3198 Score = 115 bits (58), Expect = 1e-22 Identities = 220/274 (80%) Strand = Plus / Minus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| || ||||| ||||||| || ||| ||||||| ||||| | Sbjct: 3090 attagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctg 3031 Query: 171 acaactgccgcagctgcgccacaagaacaggctcgccgcagtaaaagaccccaacgcgct 230 ||||||||| || || | || || |||||||| || ||||| || || || ||||||| Sbjct: 3030 acaactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgct 2971 Query: 231 gattctcatggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagt 290 | ||||||||| |||| || | |||||||||||||||||| ||||| || || || | Sbjct: 2970 ggttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaat 2911 Query: 291 gggtcttgacgctggtcccggacagaatatcgacccccttcttggcatggttgagttcct 350 ||||||| || || || || |||| |||||||| |||||||| ||||| | ||||| | Sbjct: 2910 gggtcttcacactagttcccgacaagatatcgacgcccttcttcgcatgctgaagttctt 2851 Query: 351 ggagcatgacgatgagcgcggaccgagcatcgcc 384 |||||||||| ||||| || || ||||||||||| Sbjct: 2850 ggagcatgacaatgagagcagaacgagcatcgcc 2817
>dbj|AK060770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B03, full insert sequence Length = 2978 Score = 115 bits (58), Expect = 1e-22 Identities = 220/274 (80%) Strand = Plus / Minus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| || ||||| ||||||| || ||| ||||||| ||||| | Sbjct: 2727 attagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctg 2668 Query: 171 acaactgccgcagctgcgccacaagaacaggctcgccgcagtaaaagaccccaacgcgct 230 ||||||||| || || | || || |||||||| || ||||| || || || ||||||| Sbjct: 2667 acaactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgct 2608 Query: 231 gattctcatggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagt 290 | ||||||||| |||| || | |||||||||||||||||| ||||| || || || | Sbjct: 2607 ggttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaat 2548 Query: 291 gggtcttgacgctggtcccggacagaatatcgacccccttcttggcatggttgagttcct 350 ||||||| || || || || |||| |||||||| |||||||| ||||| | ||||| | Sbjct: 2547 gggtcttcacactagttcccgacaagatatcgacgcccttcttcgcatgctgaagttctt 2488 Query: 351 ggagcatgacgatgagcgcggaccgagcatcgcc 384 |||||||||| ||||| || || ||||||||||| Sbjct: 2487 ggagcatgacaatgagagcagaacgagcatcgcc 2454
>gb|BT009400.1| Triticum aestivum clone wlm96.pk044.g9:fis, full insert mRNA sequence Length = 1993 Score = 97.6 bits (49), Expect = 3e-17 Identities = 115/137 (83%) Strand = Plus / Minus Query: 239 tggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagtgggtcttg 298 ||||||| ||||| |||||| ||||| | |||||||| || || ||||||||||||||| Sbjct: 1630 tggttgagggcgatacgcttgtagacgttgcgccagtttggtcgcgcaaagtgggtcttg 1571 Query: 299 acgctggtcccggacagaatatcgacccccttcttggcatggttgagttcctggagcatg 358 || | ||| ||||| | || ||||| || ||||||||||||||||| |||||||||| Sbjct: 1570 acacgggtgccggagacgatgtcgacgccgttcttggcatggttgagggactggagcatg 1511 Query: 359 acgatgagcgcggaccg 375 |||||||||||||||| Sbjct: 1510 gcgatgagcgcggaccg 1494 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 116 aaattctccttgtgaaactcaaactttgtgtt 147 |||||||||||||| ||||| || |||||||| Sbjct: 1753 aaattctccttgtggaactcgaattttgtgtt 1722
>gb|AY107147.1| Zea mays PCO125081 mRNA sequence Length = 938 Score = 95.6 bits (48), Expect = 1e-16 Identities = 198/248 (79%) Strand = Plus / Minus Query: 119 ttctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccgacaactgc 178 ||||||||||| ||||| ||||| || || || ||| |||||||||| || |||| |||| Sbjct: 638 ttctccttgtggaactcgaacttagtatttgtcttgtgggtgaagtccgctgacagctgc 579 Query: 179 cgcagctgcgccacaagaacaggctcgccgcagtaaaagaccccaacgcgctgattctca 238 || ||||| | |||||| || ||||| || ||||| || || || | ||| || ||||| Sbjct: 578 cgtagctgtggcacaaggacgggctcaccacagtagaaaactccgatgcgttggttctcg 519 Query: 239 tggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagtgggtcttg 298 ||||| ||||| | | ||||||||||||||||| || ||||| ||||| || |||||| Sbjct: 518 tggttcactgcaacatgtttgaagacgcttcgccaattcggccgtgcaaaatgcgtcttg 459 Query: 299 acgctggtcccggacagaatatcgacccccttcttggcatggttgagttcctggagcatg 358 || || || || |||| || ||||| |||||||| || || | ||| |||||||||||| Sbjct: 458 acactagttccagacaagatgtcgactcccttcttcgcgtgctggagctcctggagcatg 399 Query: 359 acgatgag 366 || ||||| Sbjct: 398 acaatgag 391
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 107/129 (82%) Strand = Plus / Plus Query: 256 cttgaagacgcttcgccagttaggccgggcaaagtgggtcttgacgctggtcccggacag 315 |||||||||||||||||| ||||| || || || |||||||| || || || || |||| Sbjct: 14604726 cttgaagacgcttcgccaattaggtcgtgcgaaatgggtcttcacactagttcccgacaa 14604785 Query: 316 aatatcgacccccttcttggcatggttgagttcctggagcatgacgatgagcgcggaccg 375 |||||||| |||||||| ||||| | ||||| ||||||||||| ||||| || || || Sbjct: 14604786 gatatcgacgcccttcttcgcatgctgaagttcttggagcatgacaatgagagcagaacg 14604845 Query: 376 agcatcgcc 384 ||||||||| Sbjct: 14604846 agcatcgcc 14604854 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| || ||||| ||||||| || ||| ||||||| ||||| | Sbjct: 14604498 attagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctg 14604557 Query: 171 acaactgcc 179 ||||||||| Sbjct: 14604558 acaactgcc 14604566
>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1164G11 Length = 142699 Score = 81.8 bits (41), Expect = 2e-12 Identities = 107/129 (82%) Strand = Plus / Plus Query: 256 cttgaagacgcttcgccagttaggccgggcaaagtgggtcttgacgctggtcccggacag 315 |||||||||||||||||| ||||| || || || |||||||| || || || || |||| Sbjct: 86103 cttgaagacgcttcgccaattaggtcgtgcgaaatgggtcttcacactagttcccgacaa 86162 Query: 316 aatatcgacccccttcttggcatggttgagttcctggagcatgacgatgagcgcggaccg 375 |||||||| |||||||| ||||| | ||||| ||||||||||| ||||| || || || Sbjct: 86163 gatatcgacgcccttcttcgcatgctgaagttcttggagcatgacaatgagagcagaacg 86222 Query: 376 agcatcgcc 384 ||||||||| Sbjct: 86223 agcatcgcc 86231 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| || ||||| ||||||| || ||| ||||||| ||||| | Sbjct: 85875 attagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctg 85934 Query: 171 acaactgcc 179 ||||||||| Sbjct: 85935 acaactgcc 85943
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 81.8 bits (41), Expect = 2e-12 Identities = 107/129 (82%) Strand = Plus / Plus Query: 256 cttgaagacgcttcgccagttaggccgggcaaagtgggtcttgacgctggtcccggacag 315 |||||||||||||||||| ||||| || || || |||||||| || || || || |||| Sbjct: 164039 cttgaagacgcttcgccaattaggtcgtgcgaaatgggtcttcacactagttcccgacaa 164098 Query: 316 aatatcgacccccttcttggcatggttgagttcctggagcatgacgatgagcgcggaccg 375 |||||||| |||||||| ||||| | ||||| ||||||||||| ||||| || || || Sbjct: 164099 gatatcgacgcccttcttcgcatgctgaagttcttggagcatgacaatgagagcagaacg 164158 Query: 376 agcatcgcc 384 ||||||||| Sbjct: 164159 agcatcgcc 164167 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 111 attagaaattctccttgtgaaactcaaactttgtgttggtattgggggtgaagtctgccg 170 ||||||| ||||||||||| || ||||| ||||||| || ||| ||||||| ||||| | Sbjct: 163811 attagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctg 163870 Query: 171 acaactgcc 179 ||||||||| Sbjct: 163871 acaactgcc 163879
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08, complete sequence Length = 197156 Score = 73.8 bits (37), Expect = 4e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 239 tggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagtgggtcttg 298 ||||||| |||||||||||| ||||| | |||||||| || ||||| |||||||||||| Sbjct: 189602 tggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtcttg 189661 Query: 299 acgctggtcccggacagaatatcgacccccttcttggcatggttgagttcctggagcatg 358 |||| ||| ||||| | | ||||| || | |||||| |||||||| ||||||||| Sbjct: 189662 acgcgggtgccggagacgacgtcgacgccgtgcttggcgtggttgagcgactggagcata 189721 Query: 359 acgatgagcgcggaccg 375 |||||||||| ||||| Sbjct: 189722 gcgatgagcgccgaccg 189738
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 73.8 bits (37), Expect = 4e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 239 tggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagtgggtcttg 298 ||||||| |||||||||||| ||||| | |||||||| || ||||| |||||||||||| Sbjct: 28957 tggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtcttg 29016 Query: 299 acgctggtcccggacagaatatcgacccccttcttggcatggttgagttcctggagcatg 358 |||| ||| ||||| | | ||||| || | |||||| |||||||| ||||||||| Sbjct: 29017 acgcgggtgccggagacgacgtcgacgccgtgcttggcgtggttgagcgactggagcata 29076 Query: 359 acgatgagcgcggaccg 375 |||||||||| ||||| Sbjct: 29077 gcgatgagcgccgaccg 29093
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 73.8 bits (37), Expect = 4e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 239 tggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagtgggtcttg 298 ||||||| |||||||||||| ||||| | |||||||| || ||||| |||||||||||| Sbjct: 18925586 tggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtcttg 18925645 Query: 299 acgctggtcccggacagaatatcgacccccttcttggcatggttgagttcctggagcatg 358 |||| ||| ||||| | | ||||| || | |||||| |||||||| ||||||||| Sbjct: 18925646 acgcgggtgccggagacgacgtcgacgccgtgcttggcgtggttgagcgactggagcata 18925705 Query: 359 acgatgagcgcggaccg 375 |||||||||| ||||| Sbjct: 18925706 gcgatgagcgccgaccg 18925722
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 73.8 bits (37), Expect = 4e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 239 tggttgactgcgatgcgcttgaagacgcttcgccagttaggccgggcaaagtgggtcttg 298 ||||||| |||||||||||| ||||| | |||||||| || ||||| |||||||||||| Sbjct: 19084408 tggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtcttg 19084467 Query: 299 acgctggtcccggacagaatatcgacccccttcttggcatggttgagttcctggagcatg 358 |||| ||| ||||| | | ||||| || | |||||| |||||||| ||||||||| Sbjct: 19084468 acgcgggtgccggagacgacgtcgacgccgtgcttggcgtggttgagcgactggagcata 19084527 Query: 359 acgatgagcgcggaccg 375 |||||||||| ||||| Sbjct: 19084528 gcgatgagcgccgaccg 19084544
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 48.1 bits (24), Expect = 0.021 Identities = 30/32 (93%) Strand = Plus / Plus Query: 112 ttagaaattctccttgtgaaactcaaactttg 143 |||||||| |||||||||||||||||| |||| Sbjct: 56224 ttagaaatgctccttgtgaaactcaaattttg 56255
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.021 Identities = 30/32 (93%) Strand = Plus / Plus Query: 112 ttagaaattctccttgtgaaactcaaactttg 143 |||||||| |||||||||||||||||| |||| Sbjct: 26031463 ttagaaatgctccttgtgaaactcaaattttg 26031494
>dbj|AK120905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031D09, full insert sequence Length = 3489 Score = 48.1 bits (24), Expect = 0.021 Identities = 30/32 (93%) Strand = Plus / Minus Query: 112 ttagaaattctccttgtgaaactcaaactttg 143 |||||||| |||||||||||||||||| |||| Sbjct: 2945 ttagaaatgctccttgtgaaactcaaattttg 2914
>ref|NM_105079.2| Arabidopsis thaliana ATRBOH F F; NAD(P)H oxidase AT1G64060 (ATRBOH F F) mRNA, complete cds Length = 3941 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 112 ttagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||||||| |||||||| Sbjct: 3327 ttagaaatgctccttgtgaaattcaaactt 3298
>emb|CT010504.7| M.truncatula DNA sequence from clone MTH2-28A3 on chromosome 3, complete sequence Length = 114882 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 113 tagaaattctccttgtgaaactcaaa 138 |||||||||||||||||||| ||||| Sbjct: 77429 tagaaattctccttgtgaaaatcaaa 77404
>gb|AF015301.1|AF015301 Arabidopsis thaliana RbohAp108 mRNA, complete cds Length = 3973 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 112 ttagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||||||| |||||||| Sbjct: 3326 ttagaaatgctccttgtgaaattcaaactt 3297
>gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I, complete sequence Length = 111222 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Plus Query: 112 ttagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||||||| |||||||| Sbjct: 74577 ttagaaatgctccttgtgaaattcaaactt 74606
>dbj|AB064343.1| Solanum tuberosum rboh F mRNA for respiratory burst oxidase protein F, complete cds Length = 3066 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 112 ttagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||||||| |||||||| Sbjct: 2835 ttagaaatgctccttgtgaaattcaaactt 2806
>dbj|AB008111.1| Arabidopsis thaliana Atrboh F mRNA, complete cds Length = 3080 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 112 ttagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||||||| |||||||| Sbjct: 2849 ttagaaatgctccttgtgaaattcaaactt 2820
>ref|NM_202070.1| Arabidopsis thaliana ATRBOHB; calcium ion binding / oxidoreductase AT1G09090 (ATRBOHB) transcript variant AT1G09090.2 mRNA, complete cds Length = 2627 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 113 tagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||| ||||||||||| Sbjct: 2535 tagaaattttccttgtggaactcaaactt 2507 Score = 42.1 bits (21), Expect = 1.3 Identities = 54/65 (83%) Strand = Plus / Minus Query: 209 cagtaaaagaccccaacgcgctgattctcatggttgactgcgatgcgcttgaagacgctt 268 ||||| || |||||||| || ||||| | ||||||||||||| | |||||||||| || Sbjct: 2439 cagtagaaaaccccaactcgttgattgacgtggttgactgcgacgtgcttgaagacacta 2380 Query: 269 cgcca 273 ||||| Sbjct: 2379 cgcca 2375
>ref|NM_100780.3| Arabidopsis thaliana ATRBOHB; calcium ion binding / oxidoreductase AT1G09090 (ATRBOHB) transcript variant AT1G09090.1 mRNA, complete cds Length = 2701 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 113 tagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||| ||||||||||| Sbjct: 2609 tagaaattttccttgtggaactcaaactt 2581 Score = 42.1 bits (21), Expect = 1.3 Identities = 54/65 (83%) Strand = Plus / Minus Query: 209 cagtaaaagaccccaacgcgctgattctcatggttgactgcgatgcgcttgaagacgctt 268 ||||| || |||||||| || ||||| | ||||||||||||| | |||||||||| || Sbjct: 2513 cagtagaaaaccccaactcgttgattgacgtggttgactgcgacgtgcttgaagacacta 2454 Query: 269 cgcca 273 ||||| Sbjct: 2453 cgcca 2449
>ref|XM_955172.1| Neurospora crassa OR74A hypothetical protein (NCU07104.1) partial mRNA Length = 648 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 tctgccgacaactgccgcagc 184 ||||||||||||||||||||| Sbjct: 346 tctgccgacaactgccgcagc 366
>ref|XM_327389.1| Neurospora crassa OR74A hypothetical protein (NCU07104.1) partial mRNA Length = 648 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 tctgccgacaactgccgcagc 184 ||||||||||||||||||||| Sbjct: 346 tctgccgacaactgccgcagc 366
>emb|BX816700.1|CNS0ADX6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH63ZH03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2590 Score = 42.1 bits (21), Expect = 1.3 Identities = 54/65 (83%) Strand = Plus / Minus Query: 209 cagtaaaagaccccaacgcgctgattctcatggttgactgcgatgcgcttgaagacgctt 268 ||||| || |||||||| || ||||| | ||||||||||||| | |||||||||| || Sbjct: 2422 cagtagaaaaccccaactcgttgattgacgtggttgactgcgacgtgcttgaagacacta 2363 Query: 269 cgcca 273 ||||| Sbjct: 2362 cgcca 2358
>gb|AC068600.5| Homo sapiens BAC clone RP11-567N20 from 2, complete sequence Length = 136657 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 cttggattattatttctctac 45 ||||||||||||||||||||| Sbjct: 56393 cttggattattatttctctac 56413
>gb|BT005716.1| Arabidopsis thaliana clone RAFL14-97-K04 (R20129) putative respiratory burst oxidase protein B (At1g09090) mRNA, complete cds Length = 2721 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 113 tagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||| ||||||||||| Sbjct: 2610 tagaaattttccttgtggaactcaaactt 2582 Score = 42.1 bits (21), Expect = 1.3 Identities = 54/65 (83%) Strand = Plus / Minus Query: 209 cagtaaaagaccccaacgcgctgattctcatggttgactgcgatgcgcttgaagacgctt 268 ||||| || |||||||| || ||||| | ||||||||||||| | |||||||||| || Sbjct: 2514 cagtagaaaaccccaactcgttgattgacgtggttgactgcgacgtgcttgaagacacta 2455 Query: 269 cgcca 273 ||||| Sbjct: 2454 cgcca 2450
>gb|AF055354.1|AF055354 Arabidopsis thaliana respiratory burst oxidase protein B (RbohB) gene, complete cds Length = 3917 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 113 tagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||| ||||||||||| Sbjct: 3812 tagaaattttccttgtggaactcaaactt 3784
>gb|AC000106.1|F7G19 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence Length = 110514 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 113 tagaaattctccttgtgaaactcaaactt 141 |||||||| |||||||| ||||||||||| Sbjct: 6694 tagaaattttccttgtggaactcaaactt 6722
>emb|AL732425.7| Mouse DNA sequence from clone RP23-364L1 on chromosome X, complete sequence Length = 145042 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 158 gtgaagtctgccgacaactgccgcagctg 186 ||||||||||||||||||| |||||||| Sbjct: 74406 gtgaagtctgccgacaactagcgcagctg 74378
>gb|AC133907.9| Mus musculus chromosome 1, clone RP24-239K20, complete sequence Length = 150662 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 tacatacatatgtgtaattagaaattct 122 ||||||||||||| ||||||| |||||| Sbjct: 101833 tacatacatatgtataattagtaattct 101806
>gb|AY362953.1| Haemophilus aphrophilus strain CCUG 3715 RpoB (rpoB) gene, partial cds Length = 520 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttcctggagcatgacgatg 364 |||||||||||||||||||| Sbjct: 487 gttcctggagcatgacgatg 506
>gb|AY362931.1| Actinobacillus actinomycetemcomitans strain ATCC 29523 RpoB (rpoB) gene, partial cds Length = 520 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttcctggagcatgacgatg 364 |||||||||||||||||||| Sbjct: 487 gttcctggagcatgacgatg 506
>gb|AY362930.1| Actinobacillus actinomycetemcomitans strain ATCC 43718 RpoB (rpoB) gene, partial cds Length = 520 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttcctggagcatgacgatg 364 |||||||||||||||||||| Sbjct: 487 gttcctggagcatgacgatg 506
>gb|AE013117.1| Thermoanaerobacter tengcongensis MB4, section 144 of 244 of the complete genome Length = 11711 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 attatttctctaccttattatgat 56 ||||||||||| |||||||||||| Sbjct: 4762 attatttctcttccttattatgat 4739
>gb|AC151725.26| Medicago truncatula clone mth2-164l16, complete sequence Length = 115069 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 aaaagaccccaacgcgctgattct 236 |||||||||||||||| ||||||| Sbjct: 31680 aaaagaccccaacgcggtgattct 31657
>emb|AL356102.13| Human DNA sequence from clone RP11-490P13 on chromosome 13, complete sequence Length = 139035 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 atatgtgtaattagaaattc 121 |||||||||||||||||||| Sbjct: 123831 atatgtgtaattagaaattc 123850
>gb|AC140778.15| Mus musculus chromosome 1, clone RP24-446J17, complete sequence Length = 160859 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 95 tacatacatatgtgtaattagaaattct 122 ||||||||||||| ||||||| |||||| Sbjct: 148059 tacatacatatgtataattagtaattct 148086
>gb|AC149472.23| Medicago truncatula clone mth2-77f21, complete sequence Length = 120151 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 aaaagaccccaacgcgctgattct 236 |||||||||||||||| ||||||| Sbjct: 789 aaaagaccccaacgcggtgattct 812
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 cttgacgctggtcccggacagaat 318 |||||||||||| ||||||||||| Sbjct: 245878 cttgacgctggtaccggacagaat 245901
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gaatatcgacccccttcttg 334 |||||||||||||||||||| Sbjct: 3414643 gaatatcgacccccttcttg 3414662
>emb|BX324191.9| Mouse DNA sequence from clone RP23-457L22 on chromosome X, complete sequence Length = 68456 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tatagctacatacatatgtgtaat 112 ||||||| |||||||||||||||| Sbjct: 17218 tatagctgcatacatatgtgtaat 17195
>gb|AC119259.15| Mus musculus chromosome 18, clone RP24-285N19, complete sequence Length = 169310 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 aaaggcaggttcttacattatagc 94 ||||||||||||||||| |||||| Sbjct: 114769 aaaggcaggttcttacaatatagc 114746
>emb|AL808116.6| Mouse DNA sequence from clone RP23-97H1 on chromosome X, complete sequence Length = 200519 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 acatacatatgtgtaattagaaat 119 |||||||| ||||||||||||||| Sbjct: 114246 acatacatctgtgtaattagaaat 114269 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,972,457 Number of Sequences: 3902068 Number of extensions: 2972457 Number of successful extensions: 52171 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52010 Number of HSP's gapped (non-prelim): 153 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)