Clone Name | rbastl19c08 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106982.1| Zea mays PCO102337 mRNA sequence Length = 641 Score = 93.7 bits (47), Expect = 4e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 184 cctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactcca 243 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 207 cctatgcttcgatccgcatgttccatgtcatggtgaagctcttcccgagcggcaatgcca 266 Query: 244 gcccgcc 250 ||||||| Sbjct: 267 gcccgcc 273 Score = 46.1 bits (23), Expect = 0.080 Identities = 32/35 (91%) Strand = Plus / Plus Query: 333 aagtaggggctcgacgtggcgacggcggtggcgtc 367 ||||| ||||||||||| |||||||| |||||||| Sbjct: 350 aagtaagggctcgacgtcgcgacggcagtggcgtc 384
>ref|NM_184232.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 85.7 bits (43), Expect = 9e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 185 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 244 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975 Query: 245 ccc 247 ||| Sbjct: 2974 ccc 2972
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 85.7 bits (43), Expect = 9e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 185 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 244 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 1701639 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 1701580 Query: 245 ccc 247 ||| Sbjct: 1701579 ccc 1701577
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 85.7 bits (43), Expect = 9e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 185 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 244 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 43982 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 43923 Query: 245 ccc 247 ||| Sbjct: 43922 ccc 43920
>dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B18, full insert sequence Length = 3486 Score = 85.7 bits (43), Expect = 9e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 185 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 244 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 3035 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2976 Query: 245 ccc 247 ||| Sbjct: 2975 ccc 2973
>dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full insert sequence Length = 3193 Score = 85.7 bits (43), Expect = 9e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 185 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 244 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975 Query: 245 ccc 247 ||| Sbjct: 2974 ccc 2972
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tttaagctctataaatttaa 108 |||||||||||||||||||| Sbjct: 798940 tttaagctctataaatttaa 798959
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ccatcgtcacgccctttttc 275 |||||||||||||||||||| Sbjct: 2089400 ccatcgtcacgccctttttc 2089381
>gb|AY623084.1| Crocus sativus unknown mRNA Length = 532 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 atggtgaagctcttccccag 232 |||||||||||||||||||| Sbjct: 359 atggtgaagctcttccccag 378
>ref|XM_001000967.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha) (LOC639686), mRNA Length = 5817 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ttccatgtcatggtgaagct 223 |||||||||||||||||||| Sbjct: 3549 ttccatgtcatggtgaagct 3530
>ref|XM_001002743.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha) (LOC677358), mRNA Length = 5820 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ttccatgtcatggtgaagct 223 |||||||||||||||||||| Sbjct: 3549 ttccatgtcatggtgaagct 3530
>ref|XM_992311.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha) (LOC667772), mRNA Length = 5820 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ttccatgtcatggtgaagct 223 |||||||||||||||||||| Sbjct: 3549 ttccatgtcatggtgaagct 3530
>gb|AC122233.4| Mus musculus BAC clone RP23-137D14 from 16, complete sequence Length = 203964 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ttccatgtcatggtgaagct 223 |||||||||||||||||||| Sbjct: 52009 ttccatgtcatggtgaagct 52028
>gb|AC166563.2| Spironucleus vortens clone JGIBAWF-9G17, complete sequence Length = 40267 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 tgcgcgtccgcggccaagaagtag 338 |||||||||||||||| ||||||| Sbjct: 19060 tgcgcgtccgcggccaggaagtag 19037
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome Length = 1485148 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 actttttaagctctataaat 104 |||||||||||||||||||| Sbjct: 1103611 actttttaagctctataaat 1103630
>emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on chromosome 10 Contains part of the gene for VPS10 domain receptor protein SORCS 1, complete sequence Length = 158724 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 catgcagacggaagcagagg 165 |||||||||||||||||||| Sbjct: 93875 catgcagacggaagcagagg 93894
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 3/6 Length = 317511 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tttaagctctataaatttaa 108 |||||||||||||||||||| Sbjct: 97835 tttaagctctataaatttaa 97854
>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3, complete sequence Length = 197042 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tcagagttcacaaatggtgt 29 |||||||||||||||||||| Sbjct: 168687 tcagagttcacaaatggtgt 168668
>gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, complete sequence Length = 165311 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 atgcagacggaagcagaggc 166 |||||||||||||||||||| Sbjct: 90987 atgcagacggaagcagaggc 90968
>gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, complete sequence Length = 202956 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 aagcagaggcaaatgcagct 176 |||||||||||||||||||| Sbjct: 99826 aagcagaggcaaatgcagct 99807
>gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 750 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ttttaagctctataaattta 107 |||||||||||||||||||| Sbjct: 645 ttttaagctctataaattta 664
>gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 750 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ttttaagctctataaattta 107 |||||||||||||||||||| Sbjct: 645 ttttaagctctataaattta 664
>gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 750 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ttttaagctctataaattta 107 |||||||||||||||||||| Sbjct: 645 ttttaagctctataaattta 664
>gb|AF315118.1|AF315118 Populus euphratica clone PSR1 salt-induced mRNA sequence Length = 1079 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 atggtgaagctcttccccag 232 |||||||||||||||||||| Sbjct: 207 atggtgaagctcttccccag 188
>gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, complete sequence Length = 181663 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 agctctataaatttaaatta 112 |||||||||||||||||||| Sbjct: 175855 agctctataaatttaaatta 175836
>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22 Length = 82035 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tactttttaagctctataaa 103 |||||||||||||||||||| Sbjct: 24387 tactttttaagctctataaa 24368
>ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 (ENSANGG00000003543), partial mRNA Length = 3441 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gacgacgacgagtcgaacga 137 |||||||||||||||||||| Sbjct: 1237 gacgacgacgagtcgaacga 1256
>emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, complete sequence Length = 160710 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcagagttcacaaatggtgt 29 |||||||||||||||||||| Sbjct: 56194 tcagagttcacaaatggtgt 56213
>gb|J04639.1|TTHTAQP1A Thermus aquaticus DNA polymerase (PolI) gene Length = 2626 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 atggtgaagctcttccccag 232 |||||||||||||||||||| Sbjct: 2413 atggtgaagctcttccccag 2432
>dbj|D32013.1|TTHDNAP Thermus aquaticus gene for DNA polymerase, complete cds Length = 3026 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 atggtgaagctcttccccag 232 |||||||||||||||||||| Sbjct: 2293 atggtgaagctcttccccag 2312 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,093,333 Number of Sequences: 3902068 Number of extensions: 3093333 Number of successful extensions: 70178 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70028 Number of HSP's gapped (non-prelim): 150 length of query: 370 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 348 effective length of database: 17,147,199,772 effective search space: 5967225520656 effective search space used: 5967225520656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)