Clone Name | rbastl19c04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complete sequence Length = 203829 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 139 taacgctagctagcaagatagt 160 |||||||||||||||||||||| Sbjct: 37032 taacgctagctagcaagatagt 37053
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 ggaatagctactactagtact 101 ||||||||||||||||||||| Sbjct: 10797910 ggaatagctactactagtact 10797930
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 ggaatagctactactagtact 101 ||||||||||||||||||||| Sbjct: 56977 ggaatagctactactagtact 56957
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 ggaatagctactactagtact 101 ||||||||||||||||||||| Sbjct: 10796011 ggaatagctactactagtact 10796031
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 gtagataaatatttacatcag 179 ||||||||||||||||||||| Sbjct: 40693065 gtagataaatatttacatcag 40693045
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 gtagataaatatttacatcag 179 ||||||||||||||||||||| Sbjct: 135043 gtagataaatatttacatcag 135023
>dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full insert sequence Length = 3151 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 gtagataaatatttacatcag 179 ||||||||||||||||||||| Sbjct: 2943 gtagataaatatttacatcag 2923
>gb|AF186999.4| Homo sapiens chromosome 8 clone CTA-394H5 map 8cen, complete sequence Length = 82674 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tcttaactgccaagagcaag 273 |||||||||||||||||||| Sbjct: 21677 tcttaactgccaagagcaag 21696
>gb|AC103956.4| Homo sapiens chromosome 8, clone CTA-394H5, complete sequence Length = 82676 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tcttaactgccaagagcaag 273 |||||||||||||||||||| Sbjct: 21678 tcttaactgccaagagcaag 21697
>gb|AC011128.7| Homo sapiens chromosome 8, clone RP11-119N19, complete sequence Length = 183978 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tcttaactgccaagagcaag 273 |||||||||||||||||||| Sbjct: 174439 tcttaactgccaagagcaag 174420
>gb|AF298862.1|AF298862 Giardia intestinalis variant-specific surface protein M21-1 (M21-1) gene, partial cds Length = 1644 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tactactagtactgcaggtc 108 |||||||||||||||||||| Sbjct: 763 tactactagtactgcaggtc 744
>emb|AL671185.8| Mouse DNA sequence from clone RP23-192N1 on chromosome X, complete sequence Length = 229574 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gccaagagcaagcaaaccag 281 |||||||||||||||||||| Sbjct: 207832 gccaagagcaagcaaaccag 207851 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,928,621 Number of Sequences: 3902068 Number of extensions: 2928621 Number of successful extensions: 55734 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55658 Number of HSP's gapped (non-prelim): 76 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)