ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX294386.5| Zebrafish DNA sequence from clone CH211-207B9 in... 46 0.070
2gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.28
3emb|AL365224.8| Human DNA sequence from clone RP11-96B21 on chro... 44 0.28
4emb|AL033530.1|HS629A15 Human DNA sequence from clone RP4-629A15... 44 0.28
5emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, ... 44 0.28
6emb|AL049525.1|ATF25I24 Arabidopsis thaliana DNA chromosome 4, B... 44 0.28
7ref|XM_687725.1| PREDICTED: Danio rerio hypothetical protein LOC... 44 0.28
8ref|XM_685944.1| PREDICTED: Danio rerio hypothetical protein LOC... 44 0.28
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
10gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complet... 44 0.28
11emb|AL805947.8| Zebrafish DNA sequence from clone CH211-212P13, ... 44 0.28
12emb|CR759803.9| Zebrafish DNA sequence from clone DKEY-189M18 in... 44 0.28
13gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12 44 0.28
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.28
15emb|AL935044.6| Zebrafish DNA sequence from clone CH211-190O19, ... 44 0.28
16ref|XM_523104.1| PREDICTED: Pan troglodytes similar to hypotheti... 42 1.1
17gb|AC146317.3| Microcebus murinus clone CH257-477O8, complete se... 42 1.1
18ref|XM_360882.1| Magnaporthe grisea 70-15 predicted protein (MG0... 42 1.1
19gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, compl... 42 1.1
20ref|XM_720454.1| Plasmodium yoelii yoelii str. 17XNL ion transpo... 42 1.1
21gb|AY325227.1| Rattus norvegicus Ba1-651 mRNA, complete cds 42 1.1
22gb|AC055855.9| Homo sapiens chromosome 15, clone RP11-352G18, co... 42 1.1
23gb|AC016644.9| Homo sapiens chromosome 5 clone RP11-52M14, compl... 42 1.1
24emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in... 42 1.1
25gb|AC093742.3| Homo sapiens BAC clone RP11-24M8 from 4, complete... 42 1.1
26gb|AC008937.7| Homo sapiens chromosome 5 clone CTD-2310F14, comp... 42 1.1
27gb|AC116615.5| Homo sapiens BAC clone CTD-2080B4 from 4, complet... 42 1.1
28gb|AC163725.4| Pan troglodytes BAC clone CH251-612A20 from chrom... 42 1.1
29gb|AC124126.14| Mus musculus chromosome 18, clone RP23-377C8, co... 42 1.1
30gb|DP000022.1| Microcebus murinus target 1 genomic scaffold 42 1.1
31gb|AC163452.12| Mus musculus chromosome 19, clone RP23-405C7, co... 40 4.3
32gb|AC119987.13| Mus musculus chromosome 9, clone RP24-502H5, com... 40 4.3
33gb|M38272.1|GORAFPA Gorilla gorilla alpha-fetoprotein (gafp) gen... 40 4.3
34gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 40 4.3
35gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 4.3
36gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
37gb|AC118286.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
38gb|DQ162831.1| Berchemiella wilsonii var. pubipetiolata clone Bw... 40 4.3
39gb|AC140320.2| Mus musculus BAC clone RP23-401C13 from chromosom... 40 4.3
40gb|AC132233.4| Mus musculus BAC clone RP24-490D10 from chromosom... 40 4.3
41gb|AC116557.30| Mus musculus strain C57BL/6J clone rp23-239f10 m... 40 4.3
42gb|AC122331.4| Mus musculus BAC clone RP23-344I7 from chromosome... 40 4.3
43emb|AL596205.3| Human DNA sequence from clone RP11-427H12 on chr... 40 4.3
44gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's ... 40 4.3
45emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in... 40 4.3
46emb|BX936396.13| Zebrafish DNA sequence from clone DKEY-21M4 in ... 40 4.3
47gb|AC012472.7| Homo sapiens chromosome 10 clone RP11-71O9, compl... 40 4.3
48gb|AC108157.3| Homo sapiens BAC clone RP11-580P21 from 4, comple... 40 4.3
49gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
50gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
51gb|U21916.1|PTU21916 Pan troglodytes alpha-fetoprotein precursor... 40 4.3
52dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
53dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
54dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
55dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
56dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
57gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380... 40 4.3
58gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, comp... 40 4.3
59ref|XM_220918.3| PREDICTED: Rattus norvegicus Rho GTPase activat... 40 4.3
60dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
61dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
62dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
63dbj|AP004615.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
64emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.3
65emb|CR339057.6| Zebrafish DNA sequence from clone DKEY-264L20 in... 40 4.3
66emb|CR932358.4| Zebrafish DNA sequence from clone DKEY-105J12 in... 40 4.3
67emb|BX649641.19| Zebrafish DNA sequence from clone CH211-223O1 i... 40 4.3
68gb|AC155944.3| Mus musculus 6 BAC RP24-493P12 (Roswell Park Canc... 40 4.3
69emb|AL772241.27| Zebrafish DNA sequence from clone CH211-194M7 i... 40 4.3
70gb|AC145072.9| Mus musculus chromosome 5, clone RP24-94L5, compl... 40 4.3
71emb|CT030656.7| Mouse DNA sequence from clone RP23-271O7 on chro... 40 4.3
72gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
73emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4,... 40 4.3
74emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G... 40 4.3
75gb|M16110.1|HUMAFP Homo sapiens alpha-fetoprotein gene, complete... 40 4.3
76emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chro... 40 4.3 
>emb|BX294386.5| Zebrafish DNA sequence from clone CH211-207B9 in linkage group 8,
             complete sequence
          Length = 117352

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 214   atatacatttttctttttgataa 236
             |||||||||||||||||||||||
Sbjct: 26388 atatacatttttctttttgataa 26366
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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0076M06, complete sequence
          Length = 133581

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 222   ttttctttttgataaatgacgcttttatta 251
             |||||||||||||||| || ||||||||||
Sbjct: 89840 ttttctttttgataaaggaagcttttatta 89869
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>emb|AL365224.8| Human DNA sequence from clone RP11-96B21 on chromosome 6 Contains part
             the C6orf190 gene, complete sequence
          Length = 66516

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 218   acatttttctttttgataaatg 239
             ||||||||||||||||||||||
Sbjct: 63005 acatttttctttttgataaatg 63026
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>emb|AL033530.1|HS629A15 Human DNA sequence from clone RP4-629A15 on chromosome 1p31.1-31.3
             Contains EST, complete sequence
          Length = 93643

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 217   tacatttttctttttgataaat 238
             ||||||||||||||||||||||
Sbjct: 31268 tacatttttctttttgataaat 31247
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>emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 30
          Length = 198136

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 211    tacatatacatttttctttttg 232
              ||||||||||||||||||||||
Sbjct: 113816 tacatatacatttttctttttg 113795
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>emb|AL049525.1|ATF25I24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25I24 (ESSA project)
          Length = 95799

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 211   tacatatacatttttctttttg 232
             ||||||||||||||||||||||
Sbjct: 32792 tacatatacatttttctttttg 32771
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>ref|XM_687725.1| PREDICTED: Danio rerio hypothetical protein LOC564387 (LOC564387),
            mRNA
          Length = 2690

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 212  acatatacatttttctttttgataaa 237
            |||||||||||||| |||||||||||
Sbjct: 2310 acatatacatttttatttttgataaa 2335
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>ref|XM_685944.1| PREDICTED: Danio rerio hypothetical protein LOC562564 (LOC562564),
            mRNA
          Length = 2677

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 212  acatatacatttttctttttgataaa 237
            |||||||||||||| |||||||||||
Sbjct: 2298 acatatacatttttatttttgataaa 2323
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 222      ttttctttttgataaatgacgcttttatta 251
                |||||||||||||||| || ||||||||||
Sbjct: 26288191 ttttctttttgataaaggaagcttttatta 26288220



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 221      tttttctttttgataaatgacgcttttattaa 252
                ||||| ||||||||||| || |||||||||||
Sbjct: 20349632 tttttttttttgataaaggaagcttttattaa 20349663
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>gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complete sequence
          Length = 163085

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 204   ggccacatacatatacattttt 225
             ||||||||||||||||||||||
Sbjct: 90131 ggccacatacatatacattttt 90152
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>emb|AL805947.8| Zebrafish DNA sequence from clone CH211-212P13, complete sequence
          Length = 226542

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 212    acatatacatttttctttttgataaa 237
              |||||||||||||| |||||||||||
Sbjct: 185730 acatatacatttttatttttgataaa 185705
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>emb|CR759803.9| Zebrafish DNA sequence from clone DKEY-189M18 in linkage group 14,
             complete sequence
          Length = 171491

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 220   atttttctttttgataaatgac 241
             ||||||||||||||||||||||
Sbjct: 75812 atttttctttttgataaatgac 75833
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>gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12
          Length = 103673

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 211   tacatatacatttttctttttg 232
             ||||||||||||||||||||||
Sbjct: 70930 tacatatacatttttctttttg 70951
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 222      ttttctttttgataaatgacgcttttatta 251
                |||||||||||||||| || ||||||||||
Sbjct: 26602449 ttttctttttgataaaggaagcttttatta 26602478



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 221      tttttctttttgataaatgacgcttttattaa 252
                ||||| ||||||||||| || |||||||||||
Sbjct: 20659866 tttttttttttgataaaggaagcttttattaa 20659897
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>emb|AL935044.6| Zebrafish DNA sequence from clone CH211-190O19, complete sequence
          Length = 155612

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 212   acatatacatttttctttttgataaa 237
             |||||||||||||| |||||||||||
Sbjct: 28115 acatatacatttttatttttgataaa 28140
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>ref|XM_523104.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC4562
           (LOC467710), mRNA
          Length = 3765

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 11  ccgggcccctgcctggagcgtgaagctcc 39
           ||||||||| |||||||||||| ||||||
Sbjct: 383 ccgggccccagcctggagcgtgtagctcc 411
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>gb|AC146317.3| Microcebus murinus clone CH257-477O8, complete sequence
          Length = 188317

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 132    tcaacaattttgttgtgcctagtgc 156
              |||||| ||||||||||||||||||
Sbjct: 127974 tcaacatttttgttgtgcctagtgc 127950
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>ref|XM_360882.1| Magnaporthe grisea 70-15 predicted protein (MG03425.4) partial mRNA
          Length = 1137

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 87  accttggccagcaccgccaccacca 111
           |||| ||||||||||||||||||||
Sbjct: 386 acctgggccagcaccgccaccacca 362
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>gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, complete sequence
          Length = 206833

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 219    catttttctttttgataaatg 239
              |||||||||||||||||||||
Sbjct: 156648 catttttctttttgataaatg 156628
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>ref|XM_720454.1| Plasmodium yoelii yoelii str. 17XNL ion transport protein (PY05131)
            partial mRNA
          Length = 3798

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 159  aataatgaaaatatacacaat 179
            |||||||||||||||||||||
Sbjct: 3547 aataatgaaaatatacacaat 3567
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>gb|AY325227.1| Rattus norvegicus Ba1-651 mRNA, complete cds
          Length = 4444

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 94   ccagcaccgccaccaccattg 114
            |||||||||||||||||||||
Sbjct: 3005 ccagcaccgccaccaccattg 2985
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>gb|AC055855.9| Homo sapiens chromosome 15, clone RP11-352G18, complete sequence
          Length = 158420

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 11    ccgggcccctgcctggagcgtgaagctcc 39
             ||||||||| |||||||||||| ||||||
Sbjct: 56832 ccgggccccagcctggagcgtgtagctcc 56860
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>gb|AC016644.9| Homo sapiens chromosome 5 clone RP11-52M14, complete sequence
          Length = 157751

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 214    atatacatttttctttttgat 234
              |||||||||||||||||||||
Sbjct: 127124 atatacatttttctttttgat 127104
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>emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in linkage group 18,
             complete sequence
          Length = 152387

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 219   catttttctttttgataaatgacgctttt 247
             ||||||||||||||||| |||| ||||||
Sbjct: 47200 catttttctttttgatatatgatgctttt 47172
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>gb|AC093742.3| Homo sapiens BAC clone RP11-24M8 from 4, complete sequence
          Length = 114455

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 207    cacatacatatacatttttcttttt 231
              ||||||||||||||||||| |||||
Sbjct: 111667 cacatacatatacattttttttttt 111643
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>gb|AC008937.7| Homo sapiens chromosome 5 clone CTD-2310F14, complete sequence
          Length = 171480

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 214   atatacatttttctttttgat 234
             |||||||||||||||||||||
Sbjct: 86063 atatacatttttctttttgat 86043
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>gb|AC116615.5| Homo sapiens BAC clone CTD-2080B4 from 4, complete sequence
          Length = 132323

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  tggccacatacatatacatttttct 227
            |||||||||| ||||||||||||||
Sbjct: 2459 tggccacataaatatacatttttct 2435
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>gb|AC163725.4| Pan troglodytes BAC clone CH251-612A20 from chromosome unknown,
             complete sequence
          Length = 179999

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 214   atatacatttttctttttgat 234
             |||||||||||||||||||||
Sbjct: 90574 atatacatttttctttttgat 90554
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>gb|AC124126.14| Mus musculus chromosome 18, clone RP23-377C8, complete sequence
          Length = 192355

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 219    catttttctttttgataaatg 239
              |||||||||||||||||||||
Sbjct: 162322 catttttctttttgataaatg 162342
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>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 132     tcaacaattttgttgtgcctagtgc 156
               |||||| ||||||||||||||||||
Sbjct: 1259129 tcaacatttttgttgtgcctagtgc 1259105
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>gb|AC163452.12| Mus musculus chromosome 19, clone RP23-405C7, complete sequence
          Length = 185406

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   acatttttctttttgataaa 237
             ||||||||||||||||||||
Sbjct: 84530 acatttttctttttgataaa 84511
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>gb|AC119987.13| Mus musculus chromosome 9, clone RP24-502H5, complete sequence
          Length = 173716

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    atacatatacatttttcttt 229
              ||||||||||||||||||||
Sbjct: 139367 atacatatacatttttcttt 139348
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>gb|M38272.1|GORAFPA Gorilla gorilla alpha-fetoprotein (gafp) gene, complete cds
          Length = 26833

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   tacatatacatttttctttt 230
             ||||||||||||||||||||
Sbjct: 16196 tacatatacatttttctttt 16177
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   tgataaatgacgcttttattaact 254
             ||||||||| ||||||||||||||
Sbjct: 91844 tgataaatggcgcttttattaact 91867
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      ggccagcaccgccaccacca 111
               ||||||||||||||||||||
Sbjct: 1219773 ggccagcaccgccaccacca 1219754
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>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
           OJ1122_B08, complete sequence
          Length = 143955

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 223 tttctttttgataaatgacgcttt 246
           |||||||||||||||||| |||||
Sbjct: 137 tttctttttgataaatgaagcttt 160
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>gb|AC118286.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1384_A02, complete sequence
          Length = 100251

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   tttctttttgataaatgacgcttt 246
             |||||||||||||||||| |||||
Sbjct: 75557 tttctttttgataaatgaagcttt 75580
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>gb|DQ162831.1| Berchemiella wilsonii var. pubipetiolata clone Bwp23 microsatellite
           sequence
          Length = 347

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 207 cacatacatatacatttttctttt 230
           |||||||||||||||| |||||||
Sbjct: 232 cacatacatatacattgttctttt 209
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>gb|AC140320.2| Mus musculus BAC clone RP23-401C13 from chromosome 19, complete
             sequence
          Length = 197365

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   acatttttctttttgataaa 237
             ||||||||||||||||||||
Sbjct: 32288 acatttttctttttgataaa 32269
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>gb|AC132233.4| Mus musculus BAC clone RP24-490D10 from chromosome 5, complete sequence
          Length = 160438

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   tttttctttttgataaatga 240
             ||||||||||||||||||||
Sbjct: 44464 tttttctttttgataaatga 44445
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>gb|AC116557.30| Mus musculus strain C57BL/6J clone rp23-239f10 map 8, complete sequence
          Length = 232571

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   acatatacatttttcttttt 231
             ||||||||||||||||||||
Sbjct: 27654 acatatacatttttcttttt 27635
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>gb|AC122331.4| Mus musculus BAC clone RP23-344I7 from chromosome 18, complete sequence
          Length = 227966

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   taataatgaaaatatacaca 177
             ||||||||||||||||||||
Sbjct: 63852 taataatgaaaatatacaca 63833
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>emb|AL596205.3| Human DNA sequence from clone RP11-427H12 on chromosome 6, complete
             sequence
          Length = 46454

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   tatacatttttctttttgat 234
             ||||||||||||||||||||
Sbjct: 11997 tatacatttttctttttgat 12016
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>gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 210896

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 193    tctctctatctggccacatacatataca 220
              ||||||||||||||| || |||||||||
Sbjct: 183603 tctctctatctggccgcacacatataca 183576
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>emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in linkage group 13,
             complete sequence
          Length = 258636

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   acatacatatacatttttcttttt 231
             ||||| ||||||||||||||||||
Sbjct: 68488 acatatatatacatttttcttttt 68465
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>emb|BX936396.13| Zebrafish DNA sequence from clone DKEY-21M4 in linkage group 18,
             complete sequence
          Length = 27542

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   atacatatacatttttcttt 229
             ||||||||||||||||||||
Sbjct: 12152 atacatatacatttttcttt 12171
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>gb|AC012472.7| Homo sapiens chromosome 10 clone RP11-71O9, complete sequence
          Length = 148279

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   catatacatttttctttttg 232
             ||||||||||||||||||||
Sbjct: 56834 catatacatttttctttttg 56815
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>gb|AC108157.3| Homo sapiens BAC clone RP11-580P21 from 4, complete sequence
          Length = 167001

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    tacatatacatttttctttt 230
              ||||||||||||||||||||
Sbjct: 115865 tacatatacatttttctttt 115846
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>gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0459F09, complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 221   tttttctttttgataaatgacgcttttattaa 252
             ||||| ||||||||||| || |||||||||||
Sbjct: 86575 tttttttttttgataaaggaagcttttattaa 86544
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>gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0459F09, complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 221   tttttctttttgataaatgacgcttttattaa 252
             ||||| ||||||||||| || |||||||||||
Sbjct: 86575 tttttttttttgataaaggaagcttttattaa 86544
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>gb|U21916.1|PTU21916 Pan troglodytes alpha-fetoprotein precursor (AFP) gene, complete cds
          Length = 26874

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   tacatatacatttttctttt 230
             ||||||||||||||||||||
Sbjct: 16243 tacatatacatttttctttt 16224
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     gcaccgccaccaccattggt 116
              ||||||||||||||||||||
Sbjct: 198044 gcaccgccaccaccattggt 198025
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 221      tttttctttttgataaatgacgcttttattaa 252
                ||||| ||||||||||| || |||||||||||
Sbjct: 13812667 tttttttttttgataaaggaagcttttattaa 13812636
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 214      atatacatttttctttttga 233
                ||||||||||||||||||||
Sbjct: 17446736 atatacatttttctttttga 17446717
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 212      acatatacatttttctttttgata 235
                |||||||||||||| |||||||||
Sbjct: 24284842 acatatacatttttatttttgata 24284819
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 223     tttctttttgataaatgacgcttt 246
               |||||||||||||||||| |||||
Sbjct: 8279069 tttctttttgataaatgaagcttt 8279092
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>gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380F24, complete sequence
          Length = 134640

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   atatacatttttctttttga 233
             ||||||||||||||||||||
Sbjct: 76352 atatacatttttctttttga 76371
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>gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, complete sequence
          Length = 171048

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    atatacatttttctttttga 233
              ||||||||||||||||||||
Sbjct: 125247 atatacatttttctttttga 125228
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>ref|XM_220918.3| PREDICTED: Rattus norvegicus Rho GTPase activating protein 23
           (predicted) (Arhgap23_predicted), mRNA
          Length = 3687

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   caacccgggcccctgcctgg 26
           ||||||||||||||||||||
Sbjct: 587 caacccgggcccctgcctgg 606
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>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0019B14
          Length = 127570

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   atatacatttttctttttga 233
             ||||||||||||||||||||
Sbjct: 10914 atatacatttttctttttga 10895
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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0054F02
          Length = 180651

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    atatacatttttctttttga 233
              ||||||||||||||||||||
Sbjct: 170649 atatacatttttctttttga 170630
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>dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0691E09
          Length = 149859

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    acatatacatttttctttttgata 235
              |||||||||||||| |||||||||
Sbjct: 114931 acatatacatttttatttttgata 114908
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>dbj|AP004615.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0414C05
          Length = 123105

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 212  acatatacatttttctttttgata 235
            |||||||||||||| |||||||||
Sbjct: 9472 acatatacatttttatttttgata 9449
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>emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb0016C24 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 87778

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 221   tttttctttttgataaatgacgcttttattaa 252
             ||||| ||||||||||| || |||||||||||
Sbjct: 75974 tttttttttttgataaaggaagcttttattaa 75943
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>emb|CR339057.6| Zebrafish DNA sequence from clone DKEY-264L20 in linkage group 7,
            complete sequence
          Length = 109226

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  tacatttttctttttgataa 236
            ||||||||||||||||||||
Sbjct: 6791 tacatttttctttttgataa 6810
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>emb|CR932358.4| Zebrafish DNA sequence from clone DKEY-105J12 in linkage group 12,
             complete sequence
          Length = 138570

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   tacatttttctttttgataa 236
             ||||||||||||||||||||
Sbjct: 46413 tacatttttctttttgataa 46432
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>emb|BX649641.19| Zebrafish DNA sequence from clone CH211-223O1 in linkage group 18,
              complete sequence
          Length = 141018

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    atacatatacatttttcttt 229
              ||||||||||||||||||||
Sbjct: 124347 atacatatacatttttcttt 124328
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>gb|AC155944.3| Mus musculus 6 BAC RP24-493P12 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 137474

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   tacaagcataacgagttcat 293
             ||||||||||||||||||||
Sbjct: 84052 tacaagcataacgagttcat 84071
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>emb|AL772241.27| Zebrafish DNA sequence from clone CH211-194M7 in linkage group 25,
              complete sequence
          Length = 154972

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    aataatgaaaatatacacaa 178
              ||||||||||||||||||||
Sbjct: 120252 aataatgaaaatatacacaa 120233
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>gb|AC145072.9| Mus musculus chromosome 5, clone RP24-94L5, complete sequence
          Length = 217930

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tttttctttttgataaatga 240
             ||||||||||||||||||||
Sbjct: 12773 tttttctttttgataaatga 12792
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>emb|CT030656.7| Mouse DNA sequence from clone RP23-271O7 on chromosome 9, complete
             sequence
          Length = 215427

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   atacatatacatttttcttt 229
             ||||||||||||||||||||
Sbjct: 15539 atacatatacatttttcttt 15520
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 221      tttttctttttgataaatgacgcttttattaa 252
                ||||| ||||||||||| || |||||||||||
Sbjct: 13766947 tttttttttttgataaaggaagcttttattaa 13766916
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>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06,
              complete sequence
          Length = 145517

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     gcaccgccaccaccattggt 116
              ||||||||||||||||||||
Sbjct: 129331 gcaccgccaccaccattggt 129312
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>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 155451

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 221    tttttctttttgataaatgacgcttttattaa 252
              ||||| ||||||||||| || |||||||||||
Sbjct: 128326 tttttttttttgataaaggaagcttttattaa 128295
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>gb|M16110.1|HUMAFP Homo sapiens alpha-fetoprotein gene, complete cds
          Length = 27553

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   tacatatacatttttctttt 230
             ||||||||||||||||||||
Sbjct: 16870 tacatatacatttttctttt 16851
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>emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chromosome X, complete
             sequence
          Length = 141025

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   tatacatttttctttttgataaat 238
             |||||||||||||||| |||||||
Sbjct: 33139 tatacatttttcttttagataaat 33162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,602,869
Number of Sequences: 3902068
Number of extensions: 4602869
Number of successful extensions: 119806
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119316
Number of HSP's gapped (non-prelim): 490
length of query: 326
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 304
effective length of database: 17,147,199,772
effective search space: 5212748730688
effective search space used: 5212748730688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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