ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chr... 40 1.5
2dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 1.5
3gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, comp... 38 5.9
4emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chr... 38 5.9

>emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chromosome 10 Contains the
              gene for a novel thioesterase domain containing protein
              (FLJ11106), the gene for ribonuclease P (38kD) (RPP38), the
              gene for a novel protein (FLJ38219), the gene for a novel
              protein, the NMT2 gene for N-myristoyltransferase 2, the 3'
              end of the gene for a novel protein (LOC221061), a novel
              gene, a pseudogene similar to part of
              glyceraldehyde-3-phosphate dehydrogenase
              (GAPD)(G3PD,GAPDH), a peptidylprolyl isomerase A
              (cyclophilin A) (PPIA)(CYPA,CYPH) pseudogene, a NADH
              dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa
              (NDUFA4)(MLRQ) pseudogene and three CpG islands, complete
              sequence
          Length = 194802

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tggaagggggcaaggaaaac 24
              ||||||||||||||||||||
Sbjct: 116880 tggaagggggcaaggaaaac 116899



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     tggagctggaaatacatttg 123
               ||||||||||||||||||||
Sbjct: 6293867 tggagctggaaatacatttg 6293848



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>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence
          Length = 256719

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      atcttggaagggggcaagg 19
              |||||||||||||||||||
Sbjct: 136322 atcttggaagggggcaagg 136304



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>emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chromosome 4, complete
             sequence
          Length = 201246

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 83    gttagcattcacactggaa 101
             |||||||||||||||||||
Sbjct: 64899 gttagcattcacactggaa 64881


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 922,872
Number of Sequences: 3902068
Number of extensions: 922872
Number of successful extensions: 52378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52367
Number of HSP's gapped (non-prelim): 11
length of query: 127
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 106
effective length of database: 17,151,101,840
effective search space: 1818016795040
effective search space used: 1818016795040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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