Clone Name | rbastl19b12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chr... | 40 | 1.5 | 2 | dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... | 40 | 1.5 | 3 | gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, comp... | 38 | 5.9 | 4 | emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chr... | 38 | 5.9 |
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>emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chromosome 10 Contains the gene for a novel thioesterase domain containing protein (FLJ11106), the gene for ribonuclease P (38kD) (RPP38), the gene for a novel protein (FLJ38219), the gene for a novel protein, the NMT2 gene for N-myristoyltransferase 2, the 3' end of the gene for a novel protein (LOC221061), a novel gene, a pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase (GAPD)(G3PD,GAPDH), a peptidylprolyl isomerase A (cyclophilin A) (PPIA)(CYPA,CYPH) pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4)(MLRQ) pseudogene and three CpG islands, complete sequence Length = 194802 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tggaagggggcaaggaaaac 24 |||||||||||||||||||| Sbjct: 116880 tggaagggggcaaggaaaac 116899
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 tggagctggaaatacatttg 123 |||||||||||||||||||| Sbjct: 6293867 tggagctggaaatacatttg 6293848
>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence Length = 256719 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 atcttggaagggggcaagg 19 ||||||||||||||||||| Sbjct: 136322 atcttggaagggggcaagg 136304
>emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chromosome 4, complete sequence Length = 201246 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 gttagcattcacactggaa 101 ||||||||||||||||||| Sbjct: 64899 gttagcattcacactggaa 64881 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 922,872 Number of Sequences: 3902068 Number of extensions: 922872 Number of successful extensions: 52378 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52367 Number of HSP's gapped (non-prelim): 11 length of query: 127 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 106 effective length of database: 17,151,101,840 effective search space: 1818016795040 effective search space used: 1818016795040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)