ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, com... 603 e-169
2gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase... 599 e-168
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
4dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
5dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
6dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
7dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
8dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
9gb|AE004504.1| Pseudomonas aeruginosa PAO1, section 65 of 529 of... 46 0.083
10dbj|AP006653.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.083
11emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 44 0.33
12gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosom... 42 1.3
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
14dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
15dbj|AP003829.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
16ref|XM_464692.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
17ref|XM_464691.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
18ref|NM_193402.1| Oryza sativa (japonica cultivar-group), predic... 40 5.1
19gb|AF003739.2| Caenorhabditis elegans cosmid M01D7, complete seq... 40 5.1
20gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, comp... 40 5.1
21gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
22gb|AC183830.2| Pan troglodytes BAC clone CH251-267I9 from chromo... 40 5.1
23gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
24gb|AC087778.3| Pan troglodytes clone RP43-176J10, complete sequence 40 5.1
25emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.1
26gb|AE012485.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.1
27gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.1
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
31dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
32dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
33dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete... 40 5.1
34dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.1
35gb|AY830105.1| Phytophthora infestans gypsy-like retrotransposon... 40 5.1
36gb|AY830104.1| Phytophthora infestans gypsy-like retrotransposon... 40 5.1
37dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
38dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
39gb|AC005074.1|AC005074 Homo sapiens BAC clone CTA-208H19 from 7q... 40 5.1
40gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1 
>gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, complete cds
          Length = 2738

 Score =  603 bits (304), Expect = e-169
 Identities = 326/332 (98%), Gaps = 1/332 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggctttaatttctcgcctttattcaatcaatgttatggtccatatcacaaattgcctaaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 ggctttaatttctcgcctttattcaatcaatgttatggtccatatcacaaattgcctaaa 2677

                                                                        
Query: 61   ttttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccg 120
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2676 ttt-aataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagaccg 2618

                                                                        
Query: 121  ccgatgtgagcgaccccgccgagtcctcctgcgttctggtaccgtgtgccggctgacaag 180
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2617 ccgatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgag 2558

                                                                        
Query: 181  ctcgcctccacctccgcgctgttgacgtggacggtgagctttttcggcgccgccggcgac 240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2557 ctcgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgac 2498

                                                                        
Query: 241  cggtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttg 300
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2497 cggtgccccatgagcaccaccttgcttatgaccagtgtcctgctctgtgcgtacgagttg 2438

                                            
Query: 301  tgcaccacctccgacttcaccttgatggcccc 332
            ||||||||||||||||||||||||||||||||
Sbjct: 2437 tgcaccacctccgacttcaccttgatggcccc 2406



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 353  tgaacctcaccatgctccaatcgctt 378
            ||||||| ||||||||||||||||||
Sbjct: 2382 tgaaccttaccatgctccaatcgctt 2357
to top
>gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase (AGL97) gene, complete cds
          Length = 7113

 Score =  599 bits (302), Expect = e-168
 Identities = 317/322 (98%)
 Strand = Plus / Minus

                                                                        
Query: 63   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7113 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 7054

                                                                        
Query: 123  gatgtgagcgaccccgccgagtcctcctgcgttctggtaccgtgtgccggctgacaagct 182
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7053 gatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgagct 6994

                                                                        
Query: 183  cgcctccacctccgcgctgttgacgtggacggtgagctttttcggcgccgccggcgaccg 242
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6993 cgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgaccg 6934

                                                                        
Query: 243  gtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtg 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6933 gtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtg 6874

                                                                        
Query: 303  caccacctccgacttcaccttgatggccccgtcgctccccatctcgcagctgaacctcac 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6873 caccacctccgacttcaccttgatggccccgtcgctccccatctcgcagctgaaccttac 6814

                                  
Query: 363  catgctccaatcgcttttcccg 384
            |||||||||||||||| |||||
Sbjct: 6813 catgctccaatcgcttctcccg 6792
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 63       ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
                |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 27722124 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 27722065

                  
Query: 123      ga 124
                ||
Sbjct: 27722064 ga 27722063



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                            
Query: 63       ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
                |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 27661916 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 27661975

                            
Query: 123      gatgtgagcgac 134
                || ||| |||||
Sbjct: 27661976 gacgtgcgcgac 27661987



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                            
Query: 226      ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 285
                |||| ||||| ||||||| |||||||||||||||||||||  ||  |||  |||| ||||
Sbjct: 27662082 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 27662141

                                       
Query: 286      tgtgcgtacgagttgtgcaccac 308
                 | |||||||||| |||||||||
Sbjct: 27662142 ggcgcgtacgagtcgtgcaccac 27662164



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                            
Query: 245      gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 304
                ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 27721936 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 27721877

                    
Query: 305      ccac 308
                ||||
Sbjct: 27721876 ccac 27721873
to top
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1153E06
          Length = 174588

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 63    ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
             |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 71379 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 71320

               
Query: 123   ga 124
             ||
Sbjct: 71319 ga 71318



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                         
Query: 63    ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
             |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 11171 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 11230

                         
Query: 123   gatgtgagcgac 134
             || ||| |||||
Sbjct: 11231 gacgtgcgcgac 11242



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                         
Query: 226   ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 285
             |||| ||||| ||||||| |||||||||||||||||||||  ||  |||  |||| ||||
Sbjct: 11337 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 11396

                                    
Query: 286   tgtgcgtacgagttgtgcaccac 308
              | |||||||||| |||||||||
Sbjct: 11397 ggcgcgtacgagtcgtgcaccac 11419



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 245   gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 304
             ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 71191 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 71132

                 
Query: 305   ccac 308
             ||||
Sbjct: 71131 ccac 71128
to top
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710B08
          Length = 186991

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 63    ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
             |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 24633 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 24574

               
Query: 123   ga 124
             ||
Sbjct: 24573 ga 24572



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 245   gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 304
             ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 24445 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 24386

                 
Query: 305   ccac 308
             ||||
Sbjct: 24385 ccac 24382
to top
>dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037N10, full
            insert sequence
          Length = 2804

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 63   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
            |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 2720 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 2661

              
Query: 123  ga 124
            ||
Sbjct: 2660 ga 2659



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 304
            ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 2532 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 2473

                
Query: 305  ccac 308
            ||||
Sbjct: 2472 ccac 2469
to top
>dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B12, full
            insert sequence
          Length = 2873

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 63   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
            |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 2788 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 2729

              
Query: 123  ga 124
            ||
Sbjct: 2728 ga 2727



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 304
            ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 2600 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 2541

                
Query: 305  ccac 308
            ||||
Sbjct: 2540 ccac 2537
to top
>dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D07, full
            insert sequence
          Length = 2829

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 63   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 122
            |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 2739 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 2680

                        
Query: 123  gatgtgagcgac 134
            || ||| |||||
Sbjct: 2679 gacgtgcgcgac 2668



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 226  ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 285
            |||| ||||| ||||||| |||||||||||||||||||||  ||  |||  |||| ||||
Sbjct: 2573 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 2514

                                   
Query: 286  tgtgcgtacgagttgtgcaccac 308
             | |||||||||| |||||||||
Sbjct: 2513 ggcgcgtacgagtcgtgcaccac 2491
to top
>gb|AE004504.1| Pseudomonas aeruginosa PAO1, section 65 of 529 of the complete genome
          Length = 15542

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 225  cggcgccgccggcgaccggtgcc 247
            |||||||||||||||||||||||
Sbjct: 9351 cggcgccgccggcgaccggtgcc 9329
to top
>dbj|AP006653.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT05M24, TM0338,
             complete sequence
          Length = 94745

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 301   tgcaccacctccgacttcacctt 323
             |||||||||||||||||||||||
Sbjct: 19055 tgcaccacctccgacttcacctt 19077
to top
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 191   cctccgcgctgttgacgtggacggtg 216
             |||||||||||||| |||||||||||
Sbjct: 76865 cctccgcgctgttggcgtggacggtg 76840
to top
>gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosome 1, complete sequence
          Length = 173376

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 269    tcaccagtgtcctgctctgtg 289
              |||||||||||||||||||||
Sbjct: 124572 tcaccagtgtcctgctctgtg 124552
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 174     tgacaagctcgcctccacctc 194
               |||||||||||||||||||||
Sbjct: 2076538 tgacaagctcgcctccacctc 2076558
to top
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0495H05
          Length = 205595

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 174    tgacaagctcgcctccacctc 194
              |||||||||||||||||||||
Sbjct: 160835 tgacaagctcgcctccacctc 160855
to top
>dbj|AP003829.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1417_E01
          Length = 118058

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   tgacaagctcgcctccacctc 194
             |||||||||||||||||||||
Sbjct: 32331 tgacaagctcgcctccacctc 32351
to top
>ref|XM_464692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 990

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 225 cggcgccgccggcgaccggtgccccatg 252
           |||||||||||| |||||| ||||||||
Sbjct: 489 cggcgccgccggggaccggggccccatg 462
to top
>ref|XM_464691.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2595

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 225 cggcgccgccggcgaccggtgccccatg 252
           |||||||||||| |||||| ||||||||
Sbjct: 384 cggcgccgccggggaccggggccccatg 411
to top
>ref|NM_193402.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2886

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  cgcctccacctccgcgctgt 202
            ||||||||||||||||||||
Sbjct: 1584 cgcctccacctccgcgctgt 1565
to top
>gb|AF003739.2| Caenorhabditis elegans cosmid M01D7, complete sequence
          Length = 41179

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    acaaattgcctaaattttaa 66
             ||||||||||||||||||||
Sbjct: 23822 acaaattgcctaaattttaa 23841
to top
>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence
          Length = 209365

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     caaattgcctaaattttaat 67
              ||||||||||||||||||||
Sbjct: 125400 caaattgcctaaattttaat 125381
to top
>gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0079P23, complete sequence
          Length = 125090

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   cgccgccggcgaccggtgcc 247
             ||||||||||||||||||||
Sbjct: 37939 cgccgccggcgaccggtgcc 37920
to top
>gb|AC183830.2| Pan troglodytes BAC clone CH251-267I9 from chromosome 7, complete
             sequence
          Length = 157720

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   gacttcaccttgatggcccc 332
             ||||||||||||||||||||
Sbjct: 30477 gacttcaccttgatggcccc 30458
to top
>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11,
              complete sequence
          Length = 199348

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    cgccgccggcgaccggtgcc 247
              ||||||||||||||||||||
Sbjct: 186156 cgccgccggcgaccggtgcc 186137
to top
>gb|AC087778.3| Pan troglodytes clone RP43-176J10, complete sequence
          Length = 63176

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   gacttcaccttgatggcccc 332
             ||||||||||||||||||||
Sbjct: 29544 gacttcaccttgatggcccc 29563
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     tttttcggcgccgccggcga 239
               ||||||||||||||||||||
Sbjct: 3046713 tttttcggcgccgccggcga 3046732
to top
>gb|AE012485.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 393
            of 460 of the complete genome
          Length = 12189

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  ccagcgacagcccgccgatg 126
            ||||||||||||||||||||
Sbjct: 1836 ccagcgacagcccgccgatg 1855
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     ccagcgacagcccgccgatg 126
               ||||||||||||||||||||
Sbjct: 4397098 ccagcgacagcccgccgatg 4397117
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 228      cgccgccggcgaccggtgcc 247
                ||||||||||||||||||||
Sbjct: 25099475 cgccgccggcgaccggtgcc 25099456



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 228      cgccgccggcgaccggtgcc 247
                ||||||||||||||||||||
Sbjct: 25057108 cgccgccggcgaccggtgcc 25057089
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 225     cggcgccgccggcgaccggtgccccatg 252
               |||||||||||| |||||| ||||||||
Sbjct: 6731971 cggcgccgccggggaccggggccccatg 6731944
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 183      cgcctccacctccgcgctgt 202
                ||||||||||||||||||||
Sbjct: 20626197 cgcctccacctccgcgctgt 20626178
to top
>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0024F24
          Length = 172642

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cgcctccacctccgcgctgt 202
             ||||||||||||||||||||
Sbjct: 88173 cgcctccacctccgcgctgt 88154
to top
>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1156H12
          Length = 159509

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cgcctccacctccgcgctgt 202
              ||||||||||||||||||||
Sbjct: 150019 cgcctccacctccgcgctgt 150000
to top
>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome
          Length = 351911

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    gcgccgccggcgaccggtgc 246
              ||||||||||||||||||||
Sbjct: 240810 gcgccgccggcgaccggtgc 240829
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     cggcgccgccggcgaccggt 244
               ||||||||||||||||||||
Sbjct: 2763090 cggcgccgccggcgaccggt 2763071
to top
>gb|AY830105.1| Phytophthora infestans gypsy-like retrotransposon GypsyPi-3b,
            complete sequence
          Length = 7348

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  acgaccagcgacagcccgccgatg 126
            ||||||||||| ||||||||||||
Sbjct: 2393 acgaccagcgatagcccgccgatg 2416
to top
>gb|AY830104.1| Phytophthora infestans gypsy-like retrotransposon GypsyPi-3a,
            complete sequence
          Length = 8977

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  acgaccagcgacagcccgccgatg 126
            ||||||||||| ||||||||||||
Sbjct: 3118 acgaccagcgatagcccgccgatg 3141
to top
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 225   cggcgccgccggcgaccggtgccccatg 252
             |||||||||||| |||||| ||||||||
Sbjct: 53024 cggcgccgccggggaccggggccccatg 52997
to top
>dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B05, full
           insert sequence
          Length = 990

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 225 cggcgccgccggcgaccggtgccccatg 252
           |||||||||||| |||||| ||||||||
Sbjct: 489 cggcgccgccggggaccggggccccatg 462
to top
>gb|AC005074.1|AC005074 Homo sapiens BAC clone CTA-208H19 from 7q11.23, complete sequence
          Length = 50604

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   gacttcaccttgatggcccc 332
             ||||||||||||||||||||
Sbjct: 39322 gacttcaccttgatggcccc 39303
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 228      cgccgccggcgaccggtgcc 247
                ||||||||||||||||||||
Sbjct: 25410494 cgccgccggcgaccggtgcc 25410475



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 228      cgccgccggcgaccggtgcc 247
                ||||||||||||||||||||
Sbjct: 25368698 cgccgccggcgaccggtgcc 25368679


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,853,385
Number of Sequences: 3902068
Number of extensions: 2853385
Number of successful extensions: 53451
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52882
Number of HSP's gapped (non-prelim): 568
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top