ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19b09 |
|---|---|
| Clone Library Name | barley_pub |
>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB| Length = 142 Score = 32.7 bits (73), Expect = 0.36 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = -2 Query: 410 WRSPCSGRCA*PTPRA 363 WRSPC RCA P PRA Sbjct: 110 WRSPCGSRCAPPAPRA 125
>TRPB_PSESY (P34817) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 408 Score = 32.0 bits (71), Expect = 0.61 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = -3 Query: 418 RRHGEVPAVGGAHDLRHGQGRAALRPEDH-----VAAQGDRSKHVVRHTFKTNRYVLH 260 R G +PA+ AH L RA P+DH ++ +GD+ V H +T + H Sbjct: 351 RLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHMETTKQEKH 408
>FANCA_HUMAN (O15360) Fanconi anemia group A protein (Protein FACA)| Length = 1455 Score = 31.6 bits (70), Expect = 0.80 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +3 Query: 276 FVLNVCLTTCLLRSPWAATWSSGRRAALPCPWRRSCAPP 392 F+L C T C L A W L C WRR C P Sbjct: 1154 FILAKCQTKCPLILTSALVWWPSLEPVLLCRWRRHCQSP 1192
>CN065_HUMAN (Q8N9R9) Protein C14orf65| Length = 162 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%) Frame = +3 Query: 318 PWAA----TWSS---GRRAALPCPWRRSCAPPTAGTSPC 413 PW + TW S A PC WR S +PP + SPC Sbjct: 99 PWRSGCPHTWGSVLSHPMPAAPCFWRSSPSPPVSAMSPC 137
>PHSG_HAEIN (P45180) Glycogen phosphorylase (EC 2.4.1.1)| Length = 821 Score = 29.3 bits (64), Expect = 3.9 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Frame = +1 Query: 106 HYIHVTTNVVQAKERMKGRKNTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVI-----R 270 H I+ NV+ ER+KGR I +S++ ++IP A+I + Sbjct: 608 HLINDVANVINNDERLKGRLKVVFIPN-------YSVSLAQLIIPAADISEQISLAGTEA 660 Query: 271 NGLS*MYVSLHACFDLLGPPRGLLDAEQPFLARGVGHAHLPLQG 402 +G S M +L+ L G LD + VG ++ + G Sbjct: 661 SGTSNMKFALNGALTL-----GTLDGANVEILENVGEDNIFIFG 699
>YIAO_ECOLI (P37676) 2,3-diketo-L-gulonate-binding periplasmic protein yiaO| precursor (2,3-DKG-binding protein) (Extracytoplasmic solute receptor protein yiaO) Length = 328 Score = 29.3 bits (64), Expect = 3.9 Identities = 21/53 (39%), Positives = 24/53 (45%) Frame = +1 Query: 244 AEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLDAEQPFLARGVGHAHLPLQG 402 A+ S +R G M +S F L P LLD PFL R HAH L G Sbjct: 72 AQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDV--PFLFRDTAHAHKTLDG 122
>ACPS_SALTY (P63466) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 125 Score = 28.5 bits (62), Expect = 6.7 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +1 Query: 166 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 345 N + I + H F + V A+ + IRNGL+ + D LG PR L Sbjct: 34 NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 91 Query: 346 AEQPFLAR--GVGHAHLPLQGLRH 411 E LA GV H H+ L RH Sbjct: 92 GEALTLAEKLGVAHMHVTLADERH 115
>ACPS_SALTI (P63467) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 125 Score = 28.5 bits (62), Expect = 6.7 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +1 Query: 166 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 345 N + I + H F + V A+ + IRNGL+ + D LG PR L Sbjct: 34 NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 91 Query: 346 AEQPFLAR--GVGHAHLPLQGLRH 411 E LA GV H H+ L RH Sbjct: 92 GEALTLAEKLGVAHMHVTLADERH 115
>ACPS_SALPA (Q5PIJ4) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 126 Score = 28.5 bits (62), Expect = 6.7 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +1 Query: 166 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 345 N + I + H F + V A+ + IRNGL+ + D LG PR L Sbjct: 35 NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 92 Query: 346 AEQPFLAR--GVGHAHLPLQGLRH 411 E LA GV H H+ L RH Sbjct: 93 GEALTLAEKLGVAHMHVTLADERH 116
>SYN_CLOPE (P58693) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 465 Score = 28.1 bits (61), Expect = 8.8 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Frame = +1 Query: 181 LQLHNAFAFFSINKNHVLIP-RAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLDAEQP 357 L+ NAF F +N + S+ I N + + + ++G D++QP Sbjct: 31 LRASNAFGFIEVNDGSFFKNVQVVFDSAKISNYKEISKLPISSSISVIGTLVETPDSKQP 90 Query: 358 F-------LARGVGHAHLPLQGLRHAFE 420 F + G+ + PLQ RH FE Sbjct: 91 FEIQAEEIIVEGMSDSDYPLQKKRHTFE 118
>ACPS_SALCH (Q57LD4) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 126 Score = 28.1 bits (61), Expect = 8.8 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +1 Query: 166 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 345 N + I + H F + V A+ + IRNGL+ + D LG PR L Sbjct: 35 NEWAIWESHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 92 Query: 346 AEQPFLAR--GVGHAHLPLQGLRH 411 E LA GV H H+ L RH Sbjct: 93 GEALTLAEKLGVAHMHVTLADERH 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,401,338 Number of Sequences: 219361 Number of extensions: 1133610 Number of successful extensions: 3092 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3033 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3092 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
