ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
2dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
4dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
5gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA,... 101 2e-18
6gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence 90 7e-15
7gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA,... 90 7e-15
8gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 42 1.4
9ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 5.6
10emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in ... 40 5.6
11emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-bindin... 40 5.6
12emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in ... 40 5.6
13gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, comple... 40 5.6
14emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34 40 5.6 
>dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090L01, full
            insert sequence
          Length = 3709

 Score =  176 bits (89), Expect = 4e-41
 Identities = 161/185 (87%)
 Strand = Plus / Minus

                                                                        
Query: 232  ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 291
            |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 3398 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 3339

                                                                        
Query: 292  cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 351
            |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 3338 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 3279

                                                                        
Query: 352  ctcgagacttccggctcacacctcaccggagtttcaccagtcggctcatagtccctgtag 411
            ||||  || ||||||||  |||||||||||||||| || |||||||| |||||| |||||
Sbjct: 3278 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtccttgtag 3219

                 
Query: 412  ctgct 416
            |||||
Sbjct: 3218 ctgct 3214
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>dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H01, full
            insert sequence
          Length = 1784

 Score =  176 bits (89), Expect = 4e-41
 Identities = 161/185 (87%)
 Strand = Plus / Minus

                                                                        
Query: 232  ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 291
            |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 1478 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 1419

                                                                        
Query: 292  cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 351
            |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 1418 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 1359

                                                                        
Query: 352  ctcgagacttccggctcacacctcaccggagtttcaccagtcggctcatagtccctgtag 411
            ||||  || ||||||||  |||||||||||||||| || |||||||| |||||| |||||
Sbjct: 1358 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtccttgtag 1299

                 
Query: 412  ctgct 416
            |||||
Sbjct: 1298 ctgct 1294
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  163 bits (82), Expect = 6e-37
 Identities = 151/174 (86%)
 Strand = Plus / Plus

                                                                            
Query: 232      ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 291
                |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 27935778 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 27935837

                                                                            
Query: 292      cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 351
                |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 27935838 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 27935897

                                                                      
Query: 352      ctcgagacttccggctcacacctcaccggagtttcaccagtcggctcatagtcc 405
                ||||  || ||||||||  |||||||||||||||| || |||||||| ||||||
Sbjct: 27935898 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtcc 27935951
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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0562A06
          Length = 154198

 Score =  163 bits (82), Expect = 6e-37
 Identities = 151/174 (86%)
 Strand = Plus / Plus

                                                                         
Query: 232   ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 291
             |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 13270 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 13329

                                                                         
Query: 292   cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 351
             |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 13330 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 13389

                                                                   
Query: 352   ctcgagacttccggctcacacctcaccggagtttcaccagtcggctcatagtcc 405
             ||||  || ||||||||  |||||||||||||||| || |||||||| ||||||
Sbjct: 13390 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtcc 13443
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>gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA, partial cds
          Length = 3385

 Score =  101 bits (51), Expect = 2e-18
 Identities = 108/127 (85%)
 Strand = Plus / Minus

                                                                        
Query: 272  attcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgca 331
            ||||||| |||||||||||||||||||| | ||||| || ||| || ||||| ||||| |
Sbjct: 3092 attcatacggatggttctcacggaactcgttcatcaaggtctccatgggcatggctcgaa 3033

                                                                        
Query: 332  acgactcgatcgtgcctttgctcgagacttccggctcacacctcaccggagtttcaccag 391
             ||||||||||| ||||||||| |  || | ||||||| ||||||| ||||||||||| |
Sbjct: 3032 gcgactcgatcgagcctttgcttggcacgttcggctcaaacctcactggagtttcacccg 2973

                   
Query: 392  tcggctc 398
            |||||||
Sbjct: 2972 tcggctc 2966
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>gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence
          Length = 2117

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 332
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 1902 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 1843

                                                                     
Query: 333  cgactcgatcgtgcctttgctcgagacttccggctcacacctcaccggagtttcacc 389
            ||| || |||| ||||||||| |  || | ||||||| |||||||||||||||||||
Sbjct: 1842 cgattcaatcgagcctttgcttggcacgttcggctcagacctcaccggagtttcacc 1786
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>gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA, partial cds
          Length = 3514

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 332
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 3176 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 3117

                                                                     
Query: 333  cgactcgatcgtgcctttgctcgagacttccggctcacacctcaccggagtttcacc 389
            ||| || |||| ||||||||| |  || | ||||||| |||||||||||||||||||
Sbjct: 3116 cgattcaatcgagcctttgcttggcacgttcggctcagacctcaccggagtttcacc 3060
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>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence
          Length = 127190

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 190    aaaagaagtattatcattgtctctc 214
              |||||||||||||||||||| ||||
Sbjct: 116413 aaaagaagtattatcattgtttctc 116437
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>ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03374.1)
            partial mRNA
          Length = 4185

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 323  tcgctcgcaacgactcgatc 342
            ||||||||||||||||||||
Sbjct: 3898 tcgctcgcaacgactcgatc 3879
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>emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in linkage group 8,
             complete sequence
          Length = 170195

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ttacactgcacacagaaaag 194
             ||||||||||||||||||||
Sbjct: 96460 ttacactgcacacagaaaag 96441
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>emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-binding domain DNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 actgcacacagaaaagaagt 198
           ||||||||||||||||||||
Sbjct: 285 actgcacacagaaaagaagt 304
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>emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in linkage group 2, complete
              sequence
          Length = 146969

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     aattttttacaagaatattc 47
              ||||||||||||||||||||
Sbjct: 120050 aattttttacaagaatattc 120069
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>gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, complete sequence
          Length = 183666

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   gaaaagaagtattatcattg 208
             ||||||||||||||||||||
Sbjct: 96583 gaaaagaagtattatcattg 96564
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>emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34
          Length = 5700

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  aaaagaagtattatcattgt 209
            ||||||||||||||||||||
Sbjct: 3635 aaaagaagtattatcattgt 3654


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,265,149
Number of Sequences: 3902068
Number of extensions: 3265149
Number of successful extensions: 51930
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51901
Number of HSP's gapped (non-prelim): 29
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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