ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19b06 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 120 bits (302), Expect = 6e-28 Identities = 58/73 (79%), Positives = 67/73 (91%) Frame = -3 Query: 357 LVKFIKGVGSLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVE 178 L K IKGVG LSHEQWRSF N+KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+VPVE Sbjct: 1018 LRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVE 1077 Query: 177 ELSKRVEELTRLH 139 EL KRVEELTRLH Sbjct: 1078 ELMKRVEELTRLH 1090
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 120 bits (302), Expect = 6e-28 Identities = 58/73 (79%), Positives = 67/73 (91%) Frame = -3 Query: 357 LVKFIKGVGSLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVE 178 L K IKGVG LSHEQWRSF N+KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+VPVE Sbjct: 1023 LRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVE 1082 Query: 177 ELSKRVEELTRLH 139 EL KRVEELTRLH Sbjct: 1083 ELMKRVEELTRLH 1095
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 117 bits (294), Expect = 5e-27 Identities = 57/75 (76%), Positives = 68/75 (90%) Frame = -3 Query: 363 ATLVKFIKGVGSLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVP 184 ++L K IKGVG LSHEQWRSF N+K+T+EARNFLDGDLIESFLDL+R+KME+++K+M V Sbjct: 1014 SSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQ 1073 Query: 183 VEELSKRVEELTRLH 139 VEEL KRVEELTRLH Sbjct: 1074 VEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 113 bits (282), Expect = 1e-25 Identities = 55/74 (74%), Positives = 64/74 (86%) Frame = -3 Query: 360 TLVKFIKGVGSLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPV 181 +L K IKGVG LSHEQWRSF N+K+T+EA+ +LDGDLIESFLDL+R KMEE++K M V V Sbjct: 1015 SLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQV 1074 Query: 180 EELSKRVEELTRLH 139 EEL KRVEELTRLH Sbjct: 1075 EELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 73.6 bits (179), Expect = 1e-13 Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 10/83 (12%) Frame = -3 Query: 357 LVKFIKGVGSLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM----- 193 L K IK VG + H WRSF ++KT A F+DGDLIESFLD++R KM+EV + Sbjct: 1058 LNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDG 1117 Query: 192 -----AVPVEELSKRVEELTRLH 139 ++L K VEELTR+H Sbjct: 1118 SGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 73.6 bits (179), Expect = 1e-13 Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 10/83 (12%) Frame = -3 Query: 357 LVKFIKGVGSLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM----- 193 L K IK VG + H WRSF ++KT A F+DGDLIESFLD++R KM+EV + Sbjct: 1058 LNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDG 1117 Query: 192 -----AVPVEELSKRVEELTRLH 139 ++L K VEELTR+H Sbjct: 1118 SGMKREATADDLIKVVEELTRIH 1140
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 46.6 bits (109), Expect = 1e-05 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Frame = -3 Query: 351 KFIKGVGSLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKA------MA 190 K I G LSH++W+ + + +TS + + +DG LIES L L + E+ + Sbjct: 996 KVIPSFGGLSHKEWKEYRGENETSPS-DLIDGSLIESILGLREPILNEIVNGGHEGTKLD 1054 Query: 189 VPVEELSKRVEELTRLH 139 + V++L +E L +LH Sbjct: 1055 ISVQDLKSIIENLEKLH 1071
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 35.0 bits (79), Expect = 0.045 Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Frame = -3 Query: 321 HEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 151 H+++RS+ + R +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1304 HQEYRSYY-----APVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 35.0 bits (79), Expect = 0.045 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -3 Query: 357 LVKFIKGVGSLSHEQWRSFLNDKKT--SEARNFLDGDLIESFLDLNRSKMEEVAKAMAVP 184 L+ + + + L+ +++R+ + KK + +R +DGDLI S+ + S+ EVAK + Sbjct: 1378 LLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIGTR 1437 Query: 183 VEELSKRVEELTRL 142 EE+ + E+ RL Sbjct: 1438 TEEILGDLLEIERL 1451
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 34.7 bits (78), Expect = 0.059 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = -3 Query: 321 HEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 151 H ++RS+ N K N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1199 HLKFRSYYNPVK-----NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/57 (31%), Positives = 33/57 (57%) Frame = -3 Query: 321 HEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 151 H + RS+ N K N +DGDL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1162 HLKLRSYYNPIK-----NVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 32.0 bits (71), Expect = 0.38 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -3 Query: 291 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 151 K E+ N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 84 KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 31.6 bits (70), Expect = 0.50 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -3 Query: 312 WRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 142 + +F +D+ + + + D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 80 FENFKDDQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 intergenic| region Length = 785 Score = 31.2 bits (69), Expect = 0.65 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = -3 Query: 357 LVKFIKGVGSLSHEQWRSFLNDKKTSEARNFLDGDLIESF-LDLNRSKMEEVAKAMAVPV 181 L+K IK ++ W+ LN+ + EA N ++ L+E N E+V + +P+ Sbjct: 60 LIKDIKFYNDFVNKFWKPTLNNLQKMEATNSMNSRLLEVMSKQFNIISTEQVERDCKIPL 119 Query: 180 EELSKRVEELTR 145 +EL E R Sbjct: 120 QELRDLNESFLR 131
>Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109)| Length = 390 Score = 30.8 bits (68), Expect = 0.84 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Frame = -3 Query: 330 SLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA-VPVEELSKRVEE 154 +L HE+ S N + R L GD+ + +NR+ ++ V A + + + S+ + E Sbjct: 224 NLPHEEVDSLYNKLNWARTRRLLRGDIPSNCATVNRASLQYVKDAQTLLHIAKCSQTIVE 283 Query: 153 LTRL--H*VAPCRVHPVLFVR 97 R+ + P ++ P++ V+ Sbjct: 284 FVRIFQQLIFPYQIVPIVIVK 304
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 29.6 bits (65), Expect = 1.9 Identities = 29/91 (31%), Positives = 41/91 (45%) Frame = -3 Query: 297 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 118 N KKT E N D +E LN KM V K+ E+ R L R H + RV Sbjct: 1160 NSKKTME--NVESLDKLECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1211 Query: 117 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 25 L RF+ V++W E+ P ++ T ++ Sbjct: 1212 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1242
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 29.6 bits (65), Expect = 1.9 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = -3 Query: 297 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 118 N KKT E + LD +E LN KM V K+ E+ R L R H + RV Sbjct: 1151 NSKKTMENVDSLDK--LECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1202 Query: 117 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 25 L RF+ V++W E+ P ++ T ++ Sbjct: 1203 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1233
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -3 Query: 255 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 139 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/64 (26%), Positives = 34/64 (53%) Frame = -3 Query: 333 GSLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEE 154 GS S + + +N + ARN +DGD++E +L L+ ++A+ + V + + + Sbjct: 1390 GSRSAKPSQPIVNGRN---ARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQ 1446 Query: 153 LTRL 142 L R+ Sbjct: 1447 LRRM 1450
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 38 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 142 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>ODP2_BUCAI (P57302) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 396 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = +2 Query: 242 DSIRSPSRKLRASDVFLSLRNDRHCSWLRLP 334 DS +S +++L SD+ ++ N+ H +W+ +P Sbjct: 159 DSKKSKTKELELSDIQKNIGNNLHRNWMNIP 189
>MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 249 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 139 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 249 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 139 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 577 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Frame = -3 Query: 330 SLSHEQWRSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAV-----PVEELSK 166 +L+ + S L + + S A+N L L+ + L+ ++E++ + + V PV E+++ Sbjct: 453 ALTTDHGYSALGELEVSRAKNQLRSSLLMN-LESRMVELEDLGRQVQVHGRKIPVREMTR 511 Query: 165 RVEELT 148 R+ ELT Sbjct: 512 RINELT 517
>Y429_METAC (Q8TTK2) UPF0272 protein MA0429| Length = 396 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -3 Query: 213 EEVAKAMAVPVEELSKRVEELTR 145 +++AKA +PV E+ +R EE+ R Sbjct: 370 KKIAKASGIPVREIMRRTEEVAR 392
>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit| 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) Length = 503 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -3 Query: 264 LDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELT 148 L+G+L+E F+ N + V A V EEL K E LT Sbjct: 240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLT 278
>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28| Length = 110 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -2 Query: 121 CTSCFICSFSLCCKPL 74 CT CF+C+F+L KPL Sbjct: 55 CTLCFLCAFNLENKPL 70
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +3 Query: 249 SGRRPGSCGPPMSSCR*GTTA---TARGSGCPRP**T*PGLP 365 SG PGS GP + GTTA + +G P+P PG+P Sbjct: 1000 SGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVP 1041
>CCNT1_HORSE (Q9XT26) Cyclin-T1 (Cyclin-T) (CycT1)| Length = 727 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -3 Query: 252 LIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 112 +I+SF +R+ + A +A VEE K++E + + VA +HP Sbjct: 71 MIQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIK---VAHACLHP 114
>GATB_WOLSU (Q7M7Y2) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 472 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -3 Query: 309 RSFLNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEE 154 RS +++++ R F D DL+ F+D + MEE K +P E+ ++ V + Sbjct: 258 RSMRGKEESADYRYFPDPDLLPVFID--ATLMEEAEKIPELPDEKRARLVRD 307
>BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-containing| protein 1) (BCK1-like resistance to osmotic shock protein 1) (Vacuolar protein sorting protein 31) (Amino acid sensor-independent protein 6) (Nitrogen permease inactivating protein Length = 844 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = -3 Query: 330 SLSHEQWRSFLNDKKTSE---ARNFLDGDLIESFL 235 S QWR+F ++K TSE RN +G+L S L Sbjct: 29 SYGSSQWRTFYDEKATSELDHLRNNANGELAPSSL 63
>CCNT1_MOUSE (Q9QWV9) Cyclin-T1 (Cyclin-T) (CycT1)| Length = 724 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -3 Query: 252 LIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 112 +I+SF +R M A +A VEE K++E + + VA +HP Sbjct: 71 MIQSFTQFHRYSMAPAALFLAAKVEEQPKKLEHVIK---VAHTCLHP 114
>IFNG_CAPHI (P79154) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -3 Query: 255 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 142 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>IFNG_BUBBU (Q8SPW9) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -3 Query: 255 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 142 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQTQRKAINELIKV 139
>IFNG_BOVIN (P07353) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -3 Query: 255 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 142 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,993,890 Number of Sequences: 219361 Number of extensions: 698226 Number of successful extensions: 2784 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2664 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2776 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
