Clone Name | rbastl19b06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 222 bits (112), Expect = 6e-55 Identities = 196/224 (87%) Strand = Plus / Minus Query: 134 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 193 |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| || Sbjct: 77982 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 77923 Query: 194 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 253 || ||||||||||||||||||||||| ||| | || || ||||||||||| |||||| Sbjct: 77922 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 77863 Query: 254 tcgccgtccaggaagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccac 313 || || |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 77862 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 77803 Query: 314 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 357 ||||| ||||||||| | ||||||||||| |||||||| ||||| Sbjct: 77802 tgctcatggctcaggttccccacgccctttatgaacttcaccag 77759
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 222 bits (112), Expect = 6e-55 Identities = 196/224 (87%) Strand = Plus / Minus Query: 134 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 193 |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| || Sbjct: 29299325 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 29299266 Query: 194 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 253 || ||||||||||||||||||||||| ||| | || || ||||||||||| |||||| Sbjct: 29299265 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 29299206 Query: 254 tcgccgtccaggaagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccac 313 || || |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 29299205 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 29299146 Query: 314 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 357 ||||| ||||||||| | ||||||||||| |||||||| ||||| Sbjct: 29299145 tgctcatggctcaggttccccacgccctttatgaacttcaccag 29299102
>dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C09, full insert sequence Length = 1135 Score = 222 bits (112), Expect = 6e-55 Identities = 196/224 (87%) Strand = Plus / Minus Query: 134 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 193 |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| || Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675 Query: 194 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 253 || ||||||||||||||||||||||| ||| | || || ||||||||||| |||||| Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615 Query: 254 tcgccgtccaggaagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccac 313 || || |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555 Query: 314 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 357 ||||| ||||||||| | ||||||||||| |||||||| ||||| Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccag 511
>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full insert sequence Length = 3792 Score = 222 bits (112), Expect = 6e-55 Identities = 196/224 (87%) Strand = Plus / Minus Query: 134 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 193 |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| || Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332 Query: 194 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 253 || ||||||||||||||||||||||| ||| | || || ||||||||||| |||||| Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272 Query: 254 tcgccgtccaggaagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccac 313 || || |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212 Query: 314 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 357 ||||| ||||||||| | ||||||||||| |||||||| ||||| Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccag 3168
>dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D04, full insert sequence Length = 1135 Score = 222 bits (112), Expect = 6e-55 Identities = 196/224 (87%) Strand = Plus / Minus Query: 134 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 193 |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| || Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675 Query: 194 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 253 || ||||||||||||||||||||||| ||| | || || ||||||||||| |||||| Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615 Query: 254 tcgccgtccaggaagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccac 313 || || |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555 Query: 314 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 357 ||||| ||||||||| | ||||||||||| |||||||| ||||| Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccag 511
>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged DNA binding protein, complete cds Length = 3658 Score = 222 bits (112), Expect = 6e-55 Identities = 196/224 (87%) Strand = Plus / Minus Query: 134 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 193 |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| || Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332 Query: 194 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 253 || ||||||||||||||||||||||| ||| | || || ||||||||||| |||||| Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272 Query: 254 tcgccgtccaggaagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccac 313 || || |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212 Query: 314 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 357 ||||| ||||||||| | ||||||||||| |||||||| ||||| Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccag 3168
>ref|XM_476019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3273 Score = 218 bits (110), Expect = 1e-53 Identities = 194/222 (87%) Strand = Plus / Minus Query: 136 ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 195 |||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| |||| Sbjct: 3273 ctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggacccccat 3214 Query: 196 cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 255 ||||||||||||||||||||||| ||| | || || ||||||||||| |||||||| Sbjct: 3213 acccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcaggtc 3154 Query: 256 gccgtccaggaagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccactg 315 || |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| || Sbjct: 3153 accatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccattg 3094 Query: 316 ctcgtggctcaggctgcccacgcccttgatgaacttgaccag 357 ||| ||||||||| | ||||||||||| |||||||| ||||| Sbjct: 3093 ctcatggctcaggttccccacgccctttatgaacttcaccag 3052
>gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence Length = 1582 Score = 172 bits (87), Expect = 5e-40 Identities = 183/215 (85%) Strand = Plus / Plus Query: 146 ctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccatcgccttggcc 205 ||||||||||| ||||||| ||||||||||||||| || ||||| |||||||||||| | Sbjct: 246 ctcgtcagctcttccaccctcttggacagctcctccacggggacgcccatcgccttggac 305 Query: 206 acctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtcgccgtccagg 265 ||||||||||||||| || | | ||||| ||||| ||||| |||||||| ||||| ||| Sbjct: 306 acctcctccatcttgctccggctaaggtcaaggaaagactcgatcaggtcaccgtcgagg 365 Query: 266 aagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccactgctcgtggctc 325 ||||| || ||||||| |||||||||||||| |||| |||||||| |||||||||||| Sbjct: 366 aagttccgagcctccgccgtcttcttgtcgttatggaaggaccgccattgctcgtggctc 425 Query: 326 aggctgcccacgcccttgatgaacttgaccagggt 360 ||| | || |||||||| ||| |||| || ||||| Sbjct: 426 aggtttccgacgccctttatgtacttcacaagggt 460
>gb|AY104362.1| Zea mays PCO060159 mRNA sequence Length = 1296 Score = 109 bits (55), Expect = 6e-21 Identities = 157/191 (82%) Strand = Plus / Minus Query: 136 ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 195 |||||| || ||||||||||| ||||| ||||||||| ||||| || | || |||| Sbjct: 860 ctagtgaagcctcgtcagctcttccacaatcttggacagatcctccaccgaaacgcccat 801 Query: 196 cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 255 ||||||| |||| ||||||||||| || | | ||||| ||||| ||||| |||||||| Sbjct: 800 agccttggacaccacctccatcttgctccggctaaggtcaaggaacgactcgatcaggtc 741 Query: 256 gccgtccaggaagttgcgggcctccgatgtcttcttgtcgttgaggaacgaccgccactg 315 || || |||||||| || ||||||| ||||||||||||||| ||||||||||||| || Sbjct: 740 accatcaaggaagttccgtgcctccgctgtcttcttgtcgttatggaacgaccgccattg 681 Query: 316 ctcgtggctca 326 ||| ||||||| Sbjct: 680 ctcatggctca 670
>ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC585193 (LOC585193), mRNA Length = 1668 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 cgccttggccacctcctccat 216 ||||||||||||||||||||| Sbjct: 264 cgccttggccacctcctccat 244
>ref|XM_482858.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1599 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cttggacagctcctcgacag 185 |||||||||||||||||||| Sbjct: 1413 cttggacagctcctcgacag 1394
>ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA Length = 5132 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgccatcgccttggccacct 209 |||||||||||||||||||| Sbjct: 2365 cgccatcgccttggccacct 2346
>ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial mRNA Length = 3123 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ccttggccacctcctccatc 217 |||||||||||||||||||| Sbjct: 2548 ccttggccacctcctccatc 2529
>ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial mRNA Length = 3123 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ccttggccacctcctccatc 217 |||||||||||||||||||| Sbjct: 2548 ccttggccacctcctccatc 2529
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 catcgccttggccacctcctccat 216 |||||||||||||||||| ||||| Sbjct: 2717222 catcgccttggccacctcttccat 2717245
>ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosis stimulating of p53 protein 2 (Tumor suppressor p53-binding protein 2) (p53-binding protein 2) (53BP2) (Bcl2-binding protein) (Bbp) (LOC490397), mRNA Length = 3792 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gtctcgtcagctcctccacc 163 |||||||||||||||||||| Sbjct: 1102 gtctcgtcagctcctccacc 1083
>gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, complete sequence Length = 138102 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ctcctccatcttggacctgt 227 |||||||||||||||||||| Sbjct: 32235 ctcctccatcttggacctgt 32254
>gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, complete sequence Length = 243114 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ctcctccatcttggacctgt 227 |||||||||||||||||||| Sbjct: 203840 ctcctccatcttggacctgt 203859
>emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter region Length = 1161 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgccatcgccttggccacct 209 |||||||||||||||||||| Sbjct: 30 cgccatcgccttggccacct 11
>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 (SLC25A5) (ANT2) pseudogene, complete sequence Length = 166664 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 tttacaacacagcgaaaacgaacaaata 107 |||||| ||||| ||||||||||||||| Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177
>emb|Y00864.1|MMCKIT Mouse c-kit mRNA Length = 5098 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgccatcgccttggccacct 209 |||||||||||||||||||| Sbjct: 2365 cgccatcgccttggccacct 2346
>gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region and partial cds Length = 1210 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgccatcgccttggccacct 209 |||||||||||||||||||| Sbjct: 75 cgccatcgccttggccacct 56
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cttggacagctcctcgacag 185 |||||||||||||||||||| Sbjct: 22995444 cttggacagctcctcgacag 22995425
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 cgccttggccacctcctcca 215 |||||||||||||||||||| Sbjct: 290449 cgccttggccacctcctcca 290468
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cttggacagctcctcgacag 185 |||||||||||||||||||| Sbjct: 169282 cttggacagctcctcgacag 169263
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cttggacagctcctcgacag 185 |||||||||||||||||||| Sbjct: 55172 cttggacagctcctcgacag 55153
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ccgccatcgccttggccacc 208 |||||||||||||||||||| Sbjct: 1957900 ccgccatcgccttggccacc 1957919
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cgccttggccacctcctcca 215 |||||||||||||||||||| Sbjct: 1595005 cgccttggccacctcctcca 1594986
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence Length = 124602 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tcttatcaaagtcgaaaaca 22 |||||||||||||||||||| Sbjct: 118575 tcttatcaaagtcgaaaaca 118594 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,877,638 Number of Sequences: 3902068 Number of extensions: 2877638 Number of successful extensions: 53124 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52846 Number of HSP's gapped (non-prelim): 270 length of query: 365 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 343 effective length of database: 17,147,199,772 effective search space: 5881489521796 effective search space used: 5881489521796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)