ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19b05 |
|---|---|
| Clone Library Name | barley_pub |
>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 835 Score = 60.8 bits (146), Expect = 1e-09 Identities = 27/52 (51%), Positives = 33/52 (63%) Frame = -1 Query: 414 QQGSCHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADCS 259 QQGSCH P S +K CV SC+V ++ E FG DPC V K L++EA CS Sbjct: 784 QQGSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAICS 835
>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 832 Score = 50.1 bits (118), Expect = 2e-06 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Frame = -1 Query: 411 QGSCHHPDSVSVVEKA-----CVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 +GSCH S E+ CV C+V+++ E FG DPCPG K LA+EA C Sbjct: 777 EGSCHAHKSYDAFEQEGLMQNCVGQEFCSVNVAPEVFGGDPCPGTMKKLAVEAIC 831
>LEG_ANTCR (P22031) D-galactoside-specific lectin (Sea urchin egg lectin)| (SUEL) Length = 105 Score = 46.2 bits (108), Expect = 3e-05 Identities = 23/48 (47%), Positives = 28/48 (58%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADCS 259 C +S VVE +C +SCTV S+ FG DPCPG K LA+ CS Sbjct: 57 CRSSNSQQVVENSCEGKSSCTVLASNSVFG-DPCPGTAKYLAVTYICS 103
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 42.4 bits (98), Expect = 4e-04 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ DC Sbjct: 83 CYLPDAFKIMSQRCNNRTQCVVVAGSDAF-PDPCPGTYKYLEVQYDC 128
>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (CIRL-1) Length = 1515 Score = 42.4 bits (98), Expect = 4e-04 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ DC Sbjct: 83 CYLPDAFKIMSQRCNNRTQCVVVAGSDAF-PDPCPGTYKYLEVQYDC 128
>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin| receptor 1) (Lectomedin-2) (Fragment) Length = 1406 Score = 42.4 bits (98), Expect = 4e-04 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ DC Sbjct: 23 CYLPDAFKIMSQRCNNRTQCVVVAGSDAF-PDPCPGTYKYLEVQYDC 68
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 42.4 bits (98), Expect = 4e-04 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ DC Sbjct: 83 CYLPDAFKIMSQRCNNRTQCVVVAGSDAF-PDPCPGTYKYLEVQYDC 128
>LPHN3_BOVIN (O97827) Latrophilin-3 precursor| Length = 1580 Score = 39.3 bits (90), Expect = 0.004 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ +C Sbjct: 146 CYLPDAYKIMSQRCNNRTQCAVVAGPDVF-PDPCPGTYKYLEVQYEC 191
>LPHN2_RAT (O88923) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) (CIRL-2) Length = 1487 Score = 39.3 bits (90), Expect = 0.004 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ +C Sbjct: 84 CYLPDAFKIMTQRCNNRTQCVVVTGSDVF-PDPCPGTYKYLEVQYEC 129
>LPHN3_HUMAN (Q9HAR2) Latrophilin-3 precursor (Calcium-independent| alpha-latrotoxin receptor 3) (Lectomedin-3) Length = 1447 Score = 39.3 bits (90), Expect = 0.004 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ +C Sbjct: 78 CYLPDAYKIMSQRCNNRTQCAVVAGPDVF-PDPCPGTYKYLEVQYEC 123
>LPHN2_BOVIN (O97817) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) Length = 1478 Score = 38.9 bits (89), Expect = 0.005 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ +C Sbjct: 84 CYLPDAFKIMTQRCNNRTQCIVVTGSDVF-PDPCPGTYKYLEVQYEC 129
>LPHN2_HUMAN (O95490) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) (Latrophilin homolog 1) (Lectomedin-1) Length = 1459 Score = 38.9 bits (89), Expect = 0.005 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C+ PD+ ++ + C N C V + F DPCPG K L ++ +C Sbjct: 84 CYLPDAFKIMTQRCNNRTQCIVVTGSDVF-PDPCPGTYKYLEVQYEC 129
>SAL_SILAS (Q9PVW8) Rhamnose-binding lectin precursor (SAL) (RBL) (Roe lectin)| Length = 308 Score = 36.6 bits (83), Expect = 0.023 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = -1 Query: 405 SCHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 +C+ D+++ V C ++++CT+ ++ FG DPCP K L I C Sbjct: 261 NCYTSDTLNKVAAGCDHLSTCTIPANNNFFG-DPCPNTYKYLRIVYAC 307 Score = 32.0 bits (71), Expect = 0.58 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -1 Query: 414 QQGSCHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADCS 259 Q +C+ ++++ V C SCTV + F DPC G K L + C+ Sbjct: 163 QNTNCYAANTLTTVAGLCNGKKSCTVEALNTIF-SDPCSGTVKYLTVTYICT 213
>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 828 Score = 36.6 bits (83), Expect = 0.023 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = -1 Query: 408 GSCHHP-DSVSVVEKACVNMNSCTVSLSDEGFGED-PCPGVTKTLAIEADC 262 GSC D+V VV K CV +CT+++S FG + C K L +E +C Sbjct: 778 GSCEGAKDAVKVVAKECVGKLNCTMNVSSHKFGSNLDCGDSPKRLFVEVEC 828
>CU063_MOUSE (P58659) Protein C21orf63 homolog precursor| Length = 440 Score = 32.0 bits (71), Expect = 0.58 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = -1 Query: 405 SCHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 +C ++ V C N +C + ++ FG D CPG +K L + C Sbjct: 111 TCVASTTLQKVLDECQNQRACHLLVNSRVFGPDLCPGSSKYLLVSFKC 158
>CU063_PANTR (Q68US5) Protein C21orf63 homolog precursor| Length = 441 Score = 31.2 bits (69), Expect = 0.99 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -1 Query: 363 CVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C N +C + ++ FG D CPG +K L + C Sbjct: 125 CQNQRACHLLVNSRVFGPDLCPGSSKYLLVSFKC 158 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/47 (25%), Positives = 21/47 (44%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C ++ V+ + C C + +++ FG PGV K L + C Sbjct: 213 CLSYSALQVLSRRCYGKQRCKIIVNNHHFGSPCLPGVKKYLTVTYAC 259
>CU063_HUMAN (P58658) Protein C21orf63 precursor (SUE21)| Length = 441 Score = 31.2 bits (69), Expect = 0.99 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -1 Query: 363 CVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C N +C + ++ FG D CPG +K L + C Sbjct: 125 CQNQRACHLLVNSRVFGPDLCPGSSKYLLVSFKC 158 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/47 (25%), Positives = 21/47 (44%) Frame = -1 Query: 402 CHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGVTKTLAIEADC 262 C ++ V+ + C C + +++ FG PGV K L + C Sbjct: 213 CLSYSALQVLSRRCYGKQRCKIIVNNHHFGSPCLPGVKKYLTVTYAC 259
>LIPA_TREDE (P61199) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 290 Score = 28.9 bits (63), Expect = 4.9 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 244 RIHRLRTVCFNGKCFGDARAW 306 +IH+L T+C +GKC W Sbjct: 36 KIHKLNTICTSGKCPNQGECW 56
>SUCD_ECOLI (P0AGE9) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 288 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = -1 Query: 414 QQGSCHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGV 292 Q G H P V +V ++ +D GFG+ C G+ Sbjct: 137 QPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGI 177
>SUCD_ECOL6 (P0AGF0) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 288 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = -1 Query: 414 QQGSCHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGV 292 Q G H P V +V ++ +D GFG+ C G+ Sbjct: 137 QPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGI 177
>SUCD_ECO57 (P0AGF1) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 288 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = -1 Query: 414 QQGSCHHPDSVSVVEKACVNMNSCTVSLSDEGFGEDPCPGV 292 Q G H P V +V ++ +D GFG+ C G+ Sbjct: 137 QPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGI 177
>MUTS_TREPA (O83348) DNA mismatch repair protein mutS| Length = 900 Score = 28.5 bits (62), Expect = 6.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -2 Query: 161 VYSGY*PYAQMHCVSGSFIPNMATSSSHEQGI 66 + G P ++H SG F+PN T SS E + Sbjct: 586 ITGGRHPVVELHLPSGEFVPNDLTLSSSEHAV 617
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 674 Score = 28.5 bits (62), Expect = 6.4 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +2 Query: 305 GSSPNPSSDSETVQLFMFTQAFSTTDTESGWWQL 406 G + NP + E + L + FS+ D +SG+WQ+ Sbjct: 310 GDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQV 343
>FLCN_XENTR (Q5M7Q1) Folliculin| Length = 579 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -1 Query: 399 HHPDSVSVVEKACVNMNSCTVSLSDEG---FGED 307 +HP S+V +ACV SC V EG FG++ Sbjct: 113 NHPQLFSIVRQACVRSLSCEVCPGREGPIFFGDE 146
>FLCN_RAT (Q76JQ2) Folliculin (Birt-Hogg-Dube syndrome protein homolog)| Length = 579 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -1 Query: 399 HHPDSVSVVEKACVNMNSCTVSLSDEG---FGED 307 +HP S+V +ACV SC V EG FG++ Sbjct: 113 NHPQLFSIVRQACVRSLSCEVCPGREGPIFFGDE 146
>FLCN_MOUSE (Q8QZS3) Folliculin| Length = 579 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -1 Query: 399 HHPDSVSVVEKACVNMNSCTVSLSDEG---FGED 307 +HP S+V +ACV SC V EG FG++ Sbjct: 113 NHPQLFSIVRQACVRSLSCEVCPGREGPIFFGDE 146
>FLCN_BOVIN (Q3B7L5) Folliculin| Length = 579 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -1 Query: 399 HHPDSVSVVEKACVNMNSCTVSLSDEG---FGED 307 +HP S+V +ACV SC V EG FG++ Sbjct: 113 NHPQLFSIVRQACVRSLSCEVCPGREGPIFFGDE 146
>TTLL3_HUMAN (Q9Y4R7) Tubulin--tyrosine ligase-like protein 3 (HOTTL)| Length = 352 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +2 Query: 290 VTPGHGSSPNPSSDSETVQLFMFTQAFSTTDTESGWWQL-PC 412 VT S+P PS + ++ T+A S+ D+ + WW L PC Sbjct: 308 VTTSPASTPRPSC---LLPMYSDTRARSSDDSTASWWALRPC 346
>AMY1_DICTH (P09961) Alpha-amylase 1 (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 685 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/59 (23%), Positives = 27/59 (45%) Frame = -3 Query: 181 FWFSFTQYTQDTDHMRKCIASQARLYLIWLRVQATSKESVTTKHIVECIMNFLYNKCWN 5 FW +F +++HM+K ++ +W +VQ + E V K + E + W+ Sbjct: 314 FWRNFLAKYDESNHMQK------KMLYVWKKVQDSPNEEVKEKAMEEVFQGQANDAYWH 366 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,031,185 Number of Sequences: 219361 Number of extensions: 1134848 Number of successful extensions: 3295 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3284 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
