ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
2dbj|AK101399.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
4dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
5dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
6ref|XM_463519.1| Oryza sativa (japonica cultivar-group), predic... 103 4e-19
7gb|BT017444.1| Zea mays clone EL01N0405G07.c mRNA sequence 96 1e-16
8gb|AY104108.1| Zea mays PCO105395 mRNA sequence 80 6e-12
9gb|AE006100.1| Pasteurella multocida subsp. multocida str. Pm70 ... 42 1.4
10emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5... 42 1.4
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
12gb|AC113096.12| Mus musculus chromosome 14, clone RP23-312M23, c... 40 5.5
13gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, comple... 40 5.5
14emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chr... 40 5.5
15gb|AC099525.5| Papio anubis clone RP41-277O17, complete sequence 40 5.5
16gb|AC133216.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
17emb|AL772382.29| Zebrafish DNA sequence from clone CH211-194E18 ... 40 5.5
18emb|AL831730.18| Zebrafish DNA sequence from clone DKEY-76A17 in... 40 5.5
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
22gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
23dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
24gb|AC154466.2| Mus musculus BAC clone RP24-148D22 from 14, compl... 40 5.5
25gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
26gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromoso... 40 5.5 
>dbj|AK102715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105C09, full
            insert sequence
          Length = 3192

 Score =  165 bits (83), Expect = 1e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                        
Query: 256  ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 315
            |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 2822 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2763

                                                                        
Query: 316  gaatccctcatctgacagcgaaactgtacagctattcatgttcacacaagccttctcaac 375
             |||||||| |||||||  || || ||||||| ||||||||||| ||| |||||||||||
Sbjct: 2762 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggccttctcaac 2703

                                                   
Query: 376  aacagatacagagtctggatggtggcagcttccttgttg 414
            ||||||||  ||||  |||||||||||||||||||||||
Sbjct: 2702 aacagatattgagttcggatggtggcagcttccttgttg 2664
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>dbj|AK101399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037E13, full
            insert sequence
          Length = 3441

 Score =  165 bits (83), Expect = 1e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                        
Query: 256  ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 315
            |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 2600 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2541

                                                                        
Query: 316  gaatccctcatctgacagcgaaactgtacagctattcatgttcacacaagccttctcaac 375
             |||||||| |||||||  || || ||||||| ||||||||||| ||| |||||||||||
Sbjct: 2540 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggccttctcaac 2481

                                                   
Query: 376  aacagatacagagtctggatggtggcagcttccttgttg 414
            ||||||||  ||||  |||||||||||||||||||||||
Sbjct: 2480 aacagatattgagttcggatggtggcagcttccttgttg 2442
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 1e-19
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                            
Query: 256      ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 315
                |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 37993877 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 37993818

                                                                     
Query: 316      gaatccctcatctgacagcgaaactgtacagctattcatgttcacacaagcct 368
                 |||||||| |||||||  || || ||||||| ||||||||||| ||| ||||
Sbjct: 37993817 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 37993765



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 366      ccttctcaacaacagatacagagtctggatggtggcagcttccttgttg 414
                ||||||||||||||||||  ||||  |||||||||||||||||||||||
Sbjct: 37993424 ccttctcaacaacagatattgagttcggatggtggcagcttccttgttg 37993376
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score =  105 bits (53), Expect = 1e-19
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                         
Query: 256   ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 315
             |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 74821 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 74762

                                                                  
Query: 316   gaatccctcatctgacagcgaaactgtacagctattcatgttcacacaagcct 368
              |||||||| |||||||  || || ||||||| ||||||||||| ||| ||||
Sbjct: 74761 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 74709



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                              
Query: 366   ccttctcaacaacagatacagagtctggatggtggcagcttccttgttg 414
             ||||||||||||||||||  ||||  |||||||||||||||||||||||
Sbjct: 74368 ccttctcaacaacagatattgagttcggatggtggcagcttccttgttg 74320
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>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score =  105 bits (53), Expect = 1e-19
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                         
Query: 256   ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 315
             |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 90153 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 90094

                                                                  
Query: 316   gaatccctcatctgacagcgaaactgtacagctattcatgttcacacaagcct 368
              |||||||| |||||||  || || ||||||| ||||||||||| ||| ||||
Sbjct: 90093 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 90041



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                              
Query: 366   ccttctcaacaacagatacagagtctggatggtggcagcttccttgttg 414
             ||||||||||||||||||  ||||  |||||||||||||||||||||||
Sbjct: 89700 ccttctcaacaacagatattgagttcggatggtggcagcttccttgttg 89652
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>ref|XM_463519.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2325

 Score =  103 bits (52), Expect = 4e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                        
Query: 256  ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 315
            |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 2325 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2266

                                                        
Query: 316  gaatccctcatctgacagcgaaactgtacagctattcatgttca 359
             |||||||| |||||||  || || ||||||| |||||||||||
Sbjct: 2265 aaatccctcgtctgacaaggagacggtacagccattcatgttca 2222



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 366  ccttctcaacaacagatacagagtctggatggtggcagcttccttgttg 414
            ||||||||||||||||||  ||||  |||||||||||||||||||||||
Sbjct: 2188 ccttctcaacaacagatattgagttcggatggtggcagcttccttgttg 2140
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>gb|BT017444.1| Zea mays clone EL01N0405G07.c mRNA sequence
          Length = 694

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Minus

                                                                       
Query: 257 taagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctccg 316
           ||||||||||| ||||| |||||||||||||||||||| |||||||||  ||| |  || 
Sbjct: 607 taagaacagtccgcttcgatggcaagtgttttggtgactccagggcataaatccttccca 548

                                                                       
Query: 317 aatccctcatctgacagcgaaactgtacagctattcatgttcacacaagccttctcaaca 376
           || | ||| |||| ||| || ||||||||||| ||  |||||| ||| ||||||||||||
Sbjct: 547 aagctctcgtctgtcagggagactgtacagctgttggtgttcagacaggccttctcaaca 488

                                       
Query: 377 acagatacagagtctggatggtggcagc 404
           |||||||  ||||  || ||||||||||
Sbjct: 487 acagataaggagttcgggtggtggcagc 460
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>gb|AY104108.1| Zea mays PCO105395 mRNA sequence
          Length = 1246

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 121/148 (81%)
 Strand = Plus / Minus

                                                                       
Query: 257 taagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctccg 316
           ||||||||||| ||||| ||||| |||||||||||||| ||| |||||  ||| |  || 
Sbjct: 992 taagaacagtccgcttcgatggcgagtgttttggtgactccatggcataaatccttccca 933

                                                                       
Query: 317 aatccctcatctgacagcgaaactgtacagctattcatgttcacacaagccttctcaaca 376
           || | ||| |||| ||| || ||||||||||| ||  |||||| ||| ||||||||||||
Sbjct: 932 aagctctcgtctgtcagggagactgtacagctgttggtgttcagacaggccttctcaaca 873

                                       
Query: 377 acagatacagagtctggatggtggcagc 404
           |||||||  ||||  || ||||||||||
Sbjct: 872 acagataaggagttcgggtggtggcagc 845
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>gb|AE006100.1| Pasteurella multocida subsp. multocida str. Pm70 section 67 of 204 of
            the complete genome
          Length = 13317

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 27   aagttcatgatgcattctaca 47
            |||||||||||||||||||||
Sbjct: 5082 aagttcatgatgcattctaca 5062
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>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
             sequence
          Length = 39550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 361   acaagccttctcaacaacagataca 385
             ||||| |||||||||||||||||||
Sbjct: 24818 acaaggcttctcaacaacagataca 24794
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 391     tggatggtggcagcttccttgttg 414
               ||||||||| ||||||||||||||
Sbjct: 6137905 tggatggtgccagcttccttgttg 6137928
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>gb|AC113096.12| Mus musculus chromosome 14, clone RP23-312M23, complete sequence
          Length = 224556

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    atgttcacacaagccttctc 372
              ||||||||||||||||||||
Sbjct: 139309 atgttcacacaagccttctc 139290
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>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence
          Length = 141509

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     caacacttattatatagaaa 28
             ||||||||||||||||||||
Sbjct: 72053 caacacttattatatagaaa 72072
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>emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chromosome 1 Contains the
             5' end of the ZA20D1 gene for zinc finger, A20 domain
             containing 1, a ribosomal protein L6 (RPL6) pseudogene,
             the VPS45A gene for vacuolar protein sorting 45A (yeast),
             the gene for CK2 interacting protein 1; HQ0024c protein
             (CKIP-1), a novel gene and a CpG island, complete sequence
          Length = 188211

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 5     attccaacacttattatatagaaa 28
             ||||||| ||||||||||||||||
Sbjct: 53879 attccaagacttattatatagaaa 53856
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>gb|AC099525.5| Papio anubis clone RP41-277O17, complete sequence
          Length = 163567

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     caacacttattatatagaaa 28
             ||||||||||||||||||||
Sbjct: 48481 caacacttattatatagaaa 48500
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>gb|AC133216.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0049B20, complete sequence
          Length = 131337

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 391   tggatggtggcagcttccttgttg 414
             ||||||||| ||||||||||||||
Sbjct: 58060 tggatggtgccagcttccttgttg 58083
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>emb|AL772382.29| Zebrafish DNA sequence from clone CH211-194E18 in linkage group 6,
             complete sequence
          Length = 97318

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 16    tattatatagaaagttcatgatgcattc 43
             ||||||||||||| ||||| ||||||||
Sbjct: 10019 tattatatagaaatttcataatgcattc 10046
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>emb|AL831730.18| Zebrafish DNA sequence from clone DKEY-76A17 in linkage group 6, complete
              sequence
          Length = 159826

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 16     tattatatagaaagttcatgatgcattc 43
              ||||||||||||| ||||| ||||||||
Sbjct: 118226 tattatatagaaatttcataatgcattc 118199
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 391      tggatggtggcagcttccttgttg 414
                ||||||||| ||||||||||||||
Sbjct: 27004772 tggatggtgccagcttccttgttg 27004795
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 391     tggatggtggcagcttccttgttg 414
               ||||||||| ||||||||||||||
Sbjct: 6137118 tggatggtgccagcttccttgttg 6137141
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 391      tggatggtggcagcttccttgttg 414
                ||||||||| ||||||||||||||
Sbjct: 33661664 tggatggtgccagcttccttgttg 33661641
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>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11,
              complete sequence
          Length = 174865

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 391    tggatggtggcagcttccttgttg 414
              ||||||||| ||||||||||||||
Sbjct: 131381 tggatggtgccagcttccttgttg 131404
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>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 391   tggatggtggcagcttccttgttg 414
             ||||||||| ||||||||||||||
Sbjct: 30071 tggatggtgccagcttccttgttg 30048
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>gb|AC154466.2| Mus musculus BAC clone RP24-148D22 from 14, complete sequence
          Length = 149772

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    atgttcacacaagccttctc 372
              ||||||||||||||||||||
Sbjct: 108639 atgttcacacaagccttctc 108658
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 391      tggatggtggcagcttccttgttg 414
                ||||||||| ||||||||||||||
Sbjct: 27331825 tggatggtgccagcttccttgttg 27331848
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>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete
              sequence
          Length = 228603

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    tggatggtggcagcttcctt 410
              ||||||||||||||||||||
Sbjct: 217578 tggatggtggcagcttcctt 217597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,544,252
Number of Sequences: 3902068
Number of extensions: 3544252
Number of successful extensions: 58843
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58702
Number of HSP's gapped (non-prelim): 139
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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