ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl19b04 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 71.2 bits (173), Expect = 9e-13 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV Sbjct: 917 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 64.7 bits (156), Expect = 9e-11 Identities = 31/35 (88%), Positives = 34/35 (97%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 E+ARLREL+TLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 914 EVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 64.3 bits (155), Expect = 1e-10 Identities = 30/35 (85%), Positives = 33/35 (94%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 E+ RLRE+NTLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 914 EVVRLREINTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 63.5 bits (153), Expect = 2e-10 Identities = 31/35 (88%), Positives = 34/35 (97%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 922 EIARLRELHTLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 63.2 bits (152), Expect = 3e-10 Identities = 29/35 (82%), Positives = 34/35 (97%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 E+ARLRE++TLKGHVESVVKLKGLDID +NQ+YTV Sbjct: 915 EVARLREVHTLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 62.4 bits (150), Expect = 4e-10 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLREL+TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 922 EIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 62.4 bits (150), Expect = 4e-10 Identities = 30/35 (85%), Positives = 34/35 (97%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 E+ARLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 918 EMARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 62.4 bits (150), Expect = 4e-10 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLREL+TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 923 EIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 61.2 bits (147), Expect = 1e-09 Identities = 30/35 (85%), Positives = 33/35 (94%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLREL+TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 922 EIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 61.2 bits (147), Expect = 1e-09 Identities = 30/35 (85%), Positives = 33/35 (94%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLREL+TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 926 EIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 61.2 bits (147), Expect = 1e-09 Identities = 30/35 (85%), Positives = 33/35 (94%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIAR REL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 670 EIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 59.7 bits (143), Expect = 3e-09 Identities = 29/35 (82%), Positives = 31/35 (88%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLREL+TLKGHVESV KLKGLDIDT +YTV Sbjct: 914 EIARLRELHTLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 55.5 bits (132), Expect = 5e-08 Identities = 26/35 (74%), Positives = 31/35 (88%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 E+ARLRE +TLKGHVESVVK KGLDI+ I Q+YT+ Sbjct: 920 EVARLRERHTLKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 55.1 bits (131), Expect = 7e-08 Identities = 29/35 (82%), Positives = 32/35 (91%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 915 EIARLRELHTLKGHVESVVKLKGLDIETAG-HYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 54.7 bits (130), Expect = 9e-08 Identities = 29/35 (82%), Positives = 32/35 (91%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 914 EIARLRELHTLKGHVESVVKLKGLDIET-PSHYTV 947
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 45.4 bits (106), Expect = 5e-05 Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTIN-QNYTV 319 EIAR+REL TLKG VES KLKG D++ N NYT+ Sbjct: 926 EIARMRELQTLKGKVESAAKLKGYDLEDPNSNNYTI 961
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 34.7 bits (78), Expect = 0.096 Identities = 17/35 (48%), Positives = 25/35 (71%) Frame = -3 Query: 423 EIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 319 EIARL E++++ H+ESV+KLK +D I +TV Sbjct: 913 EIARLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>SMG_DROME (Q23972) Protein Smaug| Length = 999 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 334 PKLHRVRNLGIGPNNMTSVLERDWNG 257 PK+H V+ G+GPNN ++ + WNG Sbjct: 769 PKMHHVKPAGVGPNN-GNINKPRWNG 793
>TIM_MOUSE (Q9R1X4) Timeless homolog (mTim)| Length = 1197 Score = 29.6 bits (65), Expect = 3.1 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = -2 Query: 376 VRGEAQGP*HRHHQPKLH-----RVRNLGIGPNNMTSVLERDWNGAP 251 V GE QGP H L R R G+GP + E +WN AP Sbjct: 1112 VPGE-QGPSEEHRTEALRALLSARKRKAGLGPTEEEATGEEEWNSAP 1157
>TAM_MYCTU (P66885) Probable trans-aconitate 2-methyltransferase (EC| 2.1.1.144) Length = 261 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 331 KLHRVRNLGIGPNNMTSVLERDWNGA 254 + RV +LG GP ++T L R W GA Sbjct: 29 RARRVVDLGCGPGHLTRYLARRWPGA 54
>TAM_MYCBO (P66886) Probable trans-aconitate 2-methyltransferase (EC| 2.1.1.144) Length = 261 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 331 KLHRVRNLGIGPNNMTSVLERDWNGA 254 + RV +LG GP ++T L R W GA Sbjct: 29 RARRVVDLGCGPGHLTRYLARRWPGA 54
>MRP2_RAT (Q63120) Canalicular multispecific organic anion transporter 1| (ATP-binding cassette sub-family C member 2) (Multidrug resistance-associated protein 2) (Canalicular multidrug resistance protein) Length = 1541 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +1 Query: 292 CLVQCPNSSHGVVLVDGVDVKALELH 369 CL + S+ G +++DG+DV ++ LH Sbjct: 1342 CLFRILESAGGQIIIDGIDVASIGLH 1367
>DPO3A_PSEAE (Q9HXZ1) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1173 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +1 Query: 133 IKTSLEDGTTETIYLVALYN*GLVKSAMFLSFMHRKNLKAEL 258 IK D + I LVAL+ G ++S M F++RK+ +AEL Sbjct: 621 IKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEL 662 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,125,825 Number of Sequences: 219361 Number of extensions: 1371065 Number of successful extensions: 2913 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2868 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2913 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
