>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score =  104 bits (259), Expect = 1e-22
 Identities = 50/83 (60%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
 Frame = -3

Query: 426  SLAGAPNLLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGD-FFRSLLVED 250
            S A  P+   L+++DN LS+K N+VVNEIRRQR SYLR++LC+KGDP+G+  F+S +VED
Sbjct: 1014 SAAELPSQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVED 1073

Query: 249  KAPGGLSYVEFLVHVHRQIQSKM 181
            +  GG SYV+FLV VHRQIQ K+
Sbjct: 1074 RGSGGASYVDFLVSVHRQIQHKL 1096

>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)|
          Length = 1094

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
 Frame = -3

Query: 405  LLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKA-PGGLS 229
            L  L   DN LS+KV  +++ +R QR  Y++L + ++ D     F+  LVEDK+  GG S
Sbjct: 1018 LSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGAS 1077

Query: 228  YVEFLVHVHRQIQSKMT 178
            YV+FL H+H++I+  ++
Sbjct: 1078 YVDFLCHMHKEIRQLLS 1094

>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 26/39 (66%), Positives = 30/39 (76%)
 Frame = -3

Query: 429  SSLAGAPNLLALEQFDNALSRKVNEVVNEIRRQRCSYLR 313
            SS A  PN   L+Q+DN LS+K N+ VNEIRRQRCSYLR
Sbjct: 997  SSAAEIPNQFVLQQYDNQLSKKFNDAVNEIRRQRCSYLR 1035

>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)|
          Length = 1032

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = -3

Query: 408  NLLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAP-GGL 232
            ++  L +  N  S+++  ++  I+++R   ++L + ++ +     FR  LVEDK   GG 
Sbjct: 955  DMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGS 1014

Query: 231  SYVEFLVHVHRQI 193
            SYV+FL  VH++I
Sbjct: 1015 SYVDFLCCVHKEI 1027

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
 Frame = -3

Query: 402  LALEQFDNALSRKVNEVVNEIRRQRCSYLRLR-LCRKGDPSGDFFRSL--LVEDKAPGGL 232
            +  ++ +N +S+K+  +V ++R    SY  +  L R+G+   + F  L  L+ED+  G  
Sbjct: 963  VTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQMGGSS 1022

Query: 231  SYVEFLVHVHRQIQ 190
             YV++++ +HRQ+Q
Sbjct: 1023 GYVDWILQLHRQVQ 1036

>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
            (Fragment)
          Length = 1078

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEF 217
            L + D   S ++   ++ +R QR  +  L + R   P    F   ++ED+    LSY EF
Sbjct: 1009 LPELDTPESARIIAFISWLREQRPFFPILYVIRDESPMKANFLQNMIEDRTESALSYYEF 1068

Query: 216  LVHVHRQI 193
            L+H+ +Q+
Sbjct: 1069 LLHIQQQV 1076

>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEF 217
            L + D   S ++   ++ +R QR  +  L + R+       F   LVED+    LSY EF
Sbjct: 1021 LPELDTPESARIAAFISWLREQRPFFPVLYVIREESLMKAAFLQSLVEDRTESALSYYEF 1080

Query: 216  LVHVHRQI 193
            L+H+ +Q+
Sbjct: 1081 LLHIQQQV 1088

>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)|
          Length = 1268

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEF 217
            L + D   S +    +  +R  R     L + +   P+   F   L+ED+     SY EF
Sbjct: 1199 LPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEF 1258

Query: 216  LVHVHRQI 193
            L+HV +QI
Sbjct: 1259 LLHVQQQI 1266

>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II|
          Length = 891

 Score = 35.8 bits (81), Expect = 0.045
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
 Frame = -3

Query: 426  SLAGAPNLLALE--QFDNALSRKVNEVVNEIRRQRCSY-LRLRLCRKG--DPSGDFFRSL 262
            SL    +L ALE    D  LS +V  +++ +R Q  S  L  ++ R+G     G+ F S 
Sbjct: 804  SLEDIDSLKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGSEGEIF-ST 862

Query: 261  LVEDKAPGGLSYVEFLVHVHRQIQSK 184
            LVED    G  Y++FL  +H  + ++
Sbjct: 863  LVEDNTREGFGYLDFLTKIHESLHTQ 888

>SODC_PHOLE (P00446) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)|
          Length = 173

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 237 HQVLCPPPTANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWTMH 380
           HQ L    T    +LQTG+P GT+ +S     V +F   L  L+  MH
Sbjct: 18  HQALAQDLTVKMTDLQTGKPVGTIELSQNKYGV-VFTPELADLTPGMH 64

>NU2C_MARPO (P06257) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 2)
           (NADH-plastoquinone oxidoreductase chain 2)
          Length = 501

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 107 KWTVFLFLKSLYSYLITLFVLRFSYKDSIVVSF 9
           K T++L+  SL S LI++ +L F YK   ++SF
Sbjct: 38  KDTIWLYFISLTSLLISIIILLFQYKTDPIISF 70

>YCF1_ADICA (Q85FG7) Hypothetical 199.0 kDa protein ycf1|
          Length = 1691

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 130  GIDNLYQPKYHTNEASGHLALDLPVNMYEEL---HIGKATRCFVLHQQRTEE--ISRRVA 294
            G+ NLYQPK +  +   H  L     +  E+   H+   T CF     +T+E     +VA
Sbjct: 1170 GVSNLYQPKMYEKQTPVHYNLIATKFLSPEIRNNHVNDLTMCFDTETGKTDEEFFDEKVA 1229

Query: 295  LSAQS 309
             S ++
Sbjct: 1230 RSIEN 1234

>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)|
            (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte
            nuclear envelope protein 1) (Myne-1) (Enaptin)
          Length = 8797

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
 Frame = +1

Query: 178  GHLALDLPVNMYEELHI--GKATRCFVLHQQRTEEISRR-VALSAQSQ-SQVRASLS 336
            GHLA    +   E+LH+  GKA  CF L ++ ++ + RR +ALS  ++  Q  ASLS
Sbjct: 1825 GHLAKLGSLGRAEDLHLLQGKAEDCFQLFEEASQVVERRQLALSHLAEFLQSHASLS 1881

>RARA_FUGRU (Q9W5Z3) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 447

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R+ N ++N++ R RC Y RL+ C
Sbjct: 118 REKNCIINKVTRNRCQYCRLQKC 140

>NU2C_PHYPA (Q6YXR9) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 2)
           (NADH-plastoquinone oxidoreductase chain 2)
          Length = 501

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 113 KIKWTVFLFLKSLYSYLITLFVLRFSYKDSIVVSF 9
           KIK     F  SL S L+++F+L F  K+  V+SF
Sbjct: 36  KIKDKNVFFFISLVSLLLSIFILIFQLKEEPVISF 70

>RARB_HUMAN (P10826) Retinoic acid receptor beta (RAR-beta) (RAR-epsilon)|
           (HBV-activated protein)
          Length = 455

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148

>RARB_COTJA (Q9W6B3) Retinoic acid receptor beta (RAR-beta)|
          Length = 455

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148

>RARB_CHICK (P22448) Retinoic acid receptor beta (RAR-beta)|
          Length = 455

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148

>STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2.7.11.1)|
          Length = 939

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 378 ALSRKVNEVVNEIRRQRCSYLRLRL---CRKGDPSGDFFRSLLVEDKAPGGL 232
           +LS+++NE   E R +R   L  +L   C  GDPS  +   + +   A GG+
Sbjct: 583 SLSKELNEKKREERERRKKQLYAKLNEICSDGDPSTKYANLVKIGQGASGGV 634

>RARB_NOTVI (P18515) Retinoic acid receptor beta (RAR-beta) (Fragment)|
          Length = 158

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 72  RDKNCVINKVTRNRCQYCRLQRC 94

>RARB_MOUSE (P22605) Retinoic acid receptor beta (RAR-beta)|
          Length = 482

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 153 RDKNCVINKVTRNRCQYCRLQKC 175

>Y1076_METJA (Q58476) Hypothetical ATP-binding protein MJ1076|
          Length = 337

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 317 K*EHLCRLISFTTSFTFLDNALSNCS 394
           K EHLC +I  T+   F+DN   N S
Sbjct: 163 KMEHLCHVICLTSDTLFIDNVYRNSS 188

>RARG2_MOUSE (P20787) Retinoic acid receptor gamma-B (RAR-gamma-B)|
          Length = 447

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 117 RDKNCIINKVTRNRCQYCRLQKC 139

>RARA_MOUSE (P11416) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 462

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

>RARA_HUMAN (P10276) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 462

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

>RARA_CANFA (Q5FBR4) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 462

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

>RARG1_HUMAN (P13631) Retinoic acid receptor gamma-1 (RAR-gamma-1)|
          Length = 454

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 128 RDKNCIINKVTRNRCQYCRLQKC 150

>SRFAA_BACSU (P27206) Surfactin synthetase subunit 1|
          Length = 3588

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 429 SSLAGAPNLLALEQFDNALSRKVNEVVNE-IRRQRCSYLRLRLCRKGDP 286
           S+LAG   L++ +  D  L   V + + E IRR     LRLRL   G+P
Sbjct: 28  SNLAGIGKLVSADAIDYVL---VEQAIQEFIRRNDAMRLRLRLDENGEP 73

>V70K_TYMVA (P20131) 69 kDa protein|
          Length = 628

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +3

Query: 264 ANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWT----MHYQIAPMPTDLVHQPRM 428
           +NG  +  GRP    S  S S S +  HSR  SL  T    +H +    PT L+  P +
Sbjct: 2   SNGLPISIGRPCTHDSQRSLSASDSRIHSRFDSLLDTDLPMVHSEGTSAPTQLLRHPNI 60

>RARG2_HUMAN (P22932) Retinoic acid receptor gamma-2 (RAR-gamma-2)|
          Length = 443

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 117 RDKNCIINKVTRNRCQYCRLQKC 139

>RARG1_MOUSE (P18911) Retinoic acid receptor gamma-A (RAR-gamma-A)|
          Length = 458

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 128 RDKNCIINKVTRNRCQYCRLQKC 150

>RARA_XENLA (P51126) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 458

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

>RARA_CHICK (Q90966) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 460

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,957,188
Number of Sequences: 219361
Number of extensions: 1465117
Number of successful extensions: 4256
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 4187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4254
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)