>BNC1_MOUSE (O35914) Zinc finger protein basonuclin-1|
          Length = 961

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +1

Query: 73  RQKER*RVQV*LSRKISTNKTK*KLHEMAS*QRGHDSCTRRFLPLFFTSGIKRNGSKHPS 252
           RQKE  R Q  + +K   N    K HE  +  R   +CT       F S  +R+  +H S
Sbjct: 680 RQKEEARFQCDICKKTFKNACSMKTHEKNTHARETHACTVEGCGAAFPS--RRSRDRHSS 737

Query: 253 HVSSGSYVFDKNQAQTS 303
           ++S    V ++   +TS
Sbjct: 738 NLSLHQKVLNEEALETS 754

>DDX21_MOUSE (Q9JIK5) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucleolar RNA|
           helicase II) (Nucleolar RNA helicase Gu) (RH II/Gu)
           (Gu-alpha) (DEAD box protein 21)
          Length = 851

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  MGTPLRNFLEIPHNTGKKKGKEYKYNSAEKSPQIKPSKS 145
           +  P    ++IP     KKGKE   ++ EKSP++K   S
Sbjct: 188 LSQPSEEEVDIPKPKKMKKGKEASGDAGEKSPRLKDGLS 226

>OXAA_RHILO (Q98D88) Inner membrane protein oxaA|
          Length = 603

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 71  TGKKKGKEYKYNSAEKSPQIKPSKSFMRWL 160
           TG +  +E+KY S EK  Q +P K+   WL
Sbjct: 245 TGTEGLQEHKYASIEKDKQYQPGKATDGWL 274


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,970,900
Number of Sequences: 219361
Number of extensions: 1144969
Number of successful extensions: 3272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3272
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)