ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 i... 40 2.0
2emb|CR293518.13| Zebrafish DNA sequence from clone CH211-129L10 ... 40 2.0
3emb|CT573313.6| H.melpomene DNA sequence from clone AEHM-46M10, ... 40 2.0
4ref|NM_100336.2| Arabidopsis thaliana transporter AT1G04570 mRNA... 38 7.7
5gb|AC127415.3| Mus musculus BAC clone RP23-450L4 from chromosome... 38 7.7
6gb|AC102125.13| Mus musculus chromosome 6, clone RP23-190E16, co... 38 7.7
7gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI ... 38 7.7
8gb|AC124568.3| Mus musculus BAC clone RP23-145K4 from 14, comple... 38 7.7
9emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 38 7.7
10emb|AL161507.2|ATCHRIV19 Arabidopsis thaliana DNA chromosome 4, ... 38 7.7
11emb|BX649630.9| Zebrafish DNA sequence from clone DKEY-125B7 in ... 38 7.7
12dbj|AK117774.1| Arabidopsis thaliana At1g04570 mRNA for unknown ... 38 7.7
13gb|AF147259.1|F10A2 Arabidopsis thaliana BAC F10A2 38 7.7
14gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 ... 38 7.7
15gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis thali... 38 7.7
16gb|AC161882.5| Mus musculus BAC clone RP23-134E24 from chromosom... 38 7.7

>emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 in linkage group 12,
              complete sequence
          Length = 168372

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    tagttacatcacaaatgtat 141
              ||||||||||||||||||||
Sbjct: 110978 tagttacatcacaaatgtat 110959



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>emb|CR293518.13| Zebrafish DNA sequence from clone CH211-129L10 in linkage group 12,
              complete sequence
          Length = 196374

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    tagttacatcacaaatgtat 141
              ||||||||||||||||||||
Sbjct: 146452 tagttacatcacaaatgtat 146433



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>emb|CT573313.6| H.melpomene DNA sequence from clone AEHM-46M10, complete sequence
          Length = 112576

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   tagttacatcacaaatgtat 141
             ||||||||||||||||||||
Sbjct: 41211 tagttacatcacaaatgtat 41192



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>ref|NM_100336.2| Arabidopsis thaliana transporter AT1G04570 mRNA, complete cds
          Length = 1935

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 119  gtatagttacatcacaaat 137
            |||||||||||||||||||
Sbjct: 1811 gtatagttacatcacaaat 1829



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>gb|AC127415.3| Mus musculus BAC clone RP23-450L4 from chromosome 19, complete sequence
          Length = 177302

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 123    agttacatcacaaatgtat 141
              |||||||||||||||||||
Sbjct: 106883 agttacatcacaaatgtat 106901



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>gb|AC102125.13| Mus musculus chromosome 6, clone RP23-190E16, complete sequence
          Length = 219870

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 112   ttgttgggtatagttacat 130
             |||||||||||||||||||
Sbjct: 48601 ttgttgggtatagttacat 48619



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>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila
             melanogaster library) complete sequence
          Length = 166613

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   agttacatcacaaatgtat 141
             |||||||||||||||||||
Sbjct: 14417 agttacatcacaaatgtat 14435



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>gb|AC124568.3| Mus musculus BAC clone RP23-145K4 from 14, complete sequence
          Length = 222946

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 120    tatagttacatcacaaatg 138
              |||||||||||||||||||
Sbjct: 134031 tatagttacatcacaaatg 134013



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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     catacacgtatacttgcat 71
              |||||||||||||||||||
Sbjct: 928026 catacacgtatacttgcat 928008



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>emb|AL161507.2|ATCHRIV19 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 19
          Length = 183181

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 112   ttgttgggtatagttacat 130
             |||||||||||||||||||
Sbjct: 24554 ttgttgggtatagttacat 24572



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>emb|BX649630.9| Zebrafish DNA sequence from clone DKEY-125B7 in linkage group 21,
             complete sequence
          Length = 124133

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    aacgatgacaaaaatgagt 94
             |||||||||||||||||||
Sbjct: 55445 aacgatgacaaaaatgagt 55427



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>dbj|AK117774.1| Arabidopsis thaliana At1g04570 mRNA for unknown protein, complete
            cds, clone: RAFL17-45-O17
          Length = 1935

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 119  gtatagttacatcacaaat 137
            |||||||||||||||||||
Sbjct: 1811 gtatagttacatcacaaat 1829



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>gb|AF147259.1|F10A2 Arabidopsis thaliana BAC F10A2
          Length = 123080

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 112   ttgttgggtatagttacat 130
             |||||||||||||||||||
Sbjct: 81536 ttgttgggtatagttacat 81554



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>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete
              sequence
          Length = 285729

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 123    agttacatcacaaatgtat 141
              |||||||||||||||||||
Sbjct: 267025 agttacatcacaaatgtat 267007



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>gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 100079

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 119   gtatagttacatcacaaat 137
             |||||||||||||||||||
Sbjct: 86230 gtatagttacatcacaaat 86248



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>gb|AC161882.5| Mus musculus BAC clone RP23-134E24 from chromosome 16, complete
             sequence
          Length = 206219

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 121   atagttacatcacaaatgt 139
             |||||||||||||||||||
Sbjct: 45270 atagttacatcacaaatgt 45252


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,244,247
Number of Sequences: 3902068
Number of extensions: 1244247
Number of successful extensions: 85855
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85816
Number of HSP's gapped (non-prelim): 39
length of query: 160
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 138
effective length of database: 17,147,199,772
effective search space: 2366313568536
effective search space used: 2366313568536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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