>NCCH_ALCXX (Q44583) RNA polymerase sigma factor nccH|
          Length = 186

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 247 IIQRSTIGSWDTYQALNRAGEMKLPWMFIIKLSRLKDLMELRGIGH 384
           I+Q + I +W      + + ++  PW+F I L++++DL   R + H
Sbjct: 50  IVQDTFIAAWHALDDFD-SDKLFRPWLFRIGLNKMRDLRRFRQVRH 94

>AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein AKR1)
          Length = 702

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 255 TVHNRIMGYLSGSK*SWRNET--PLDVYHQTLKAEGPDGATRHWPSGGPTRNL*NDLNDK 428
           T +  + G   G+  +    T  PLD  H +L A GP  A  H   GG  ++L   L   
Sbjct: 553 TTYENMFGIRDGTNITALTSTGAPLDPNHPSLSATGPAAAHSHKHKGGMLKSLSRTLGVD 612

Query: 429 CLMNSRSWRGGI 464
             + + + RG +
Sbjct: 613 PFIETITGRGAV 624

>YKE7_YEAST (P36090) Hypothetical 58.9 kDa protein in ELM1-PRI2 intergenic|
           region
          Length = 516

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +3

Query: 75  TSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGV--DVITSMQKALNGVFWYIY 248
           T+K   +D G +Y    ++ +I   N   +      S GV  DV  +   +    +  IY
Sbjct: 92  TAKTTTYDYGIAYFKQNSFDIIENDNRIDRSKVQMFSLGVIIDVQNASSDSKKHFYKEIY 151

Query: 249 YSTVHNRIMGYLSGSK*SWRNETPLDVY 332
           ++   NR   YL      W  +  LD +
Sbjct: 152 HAYAANRYSSYLESLLGQWIRQRDLDKF 179

>ISP4_SCHPO (P40900) Sexual differentiation process protein isp4|
          Length = 785

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 22/92 (23%), Positives = 45/92 (48%)
 Frame = +3

Query: 45  YKS*RILTISTSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGVDVITSMQKAL 224
           Y++   + +ST+ A  F L ++ I S  + +I+    ++  ++       D+   + KA 
Sbjct: 400 YQNYSPIFMSTTYALAFGLSFASITSVIFHVILYHGKEI-YDRLRDPPAPDIHEKLMKAY 458

Query: 225 NGVFWYIYYSTVHNRIMGYLSGSK*SWRNETP 320
           + V +Y +Y +V     G + G+   W+ ETP
Sbjct: 459 DEVPFY-WYLSVFLAFFGMMMGTIYGWKTETP 489

>MTMR5_HUMAN (O95248) SET-binding factor 1 (Sbf1) (Myotubularin-related protein 5)|
          Length = 1866

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 463  IPPRQLLEFIKHLSLRS--FHKFLVGPPDGQCLVAPSGPSALRV 338
            +P R + E++  LS R+  FH ++  P D + L   S  S L+V
Sbjct: 1548 VPCRSVWEYVDRLSKRTPVFHNYMYAPEDAEVLRPYSNVSNLKV 1591


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,649,418
Number of Sequences: 219361
Number of extensions: 1442005
Number of successful extensions: 2764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2764
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)