ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YL697_MIMIV (Q5UNV8) Hypothetical protein L697 28 6.0
2NU4M_ASTPE (P11992) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 28 7.8

>YL697_MIMIV (Q5UNV8) Hypothetical protein L697|
          Length = 375

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 27  KIWIKENVEDNCVYAEFKNLASRYVVVV*FNCFYQQLNCDNETCSMYRYTNR 182
           KI ++   EDN +Y + +N       +   N F  +++ D   C M +Y +R
Sbjct: 43  KITVEYVPEDNYIYIDLENAIQFIKFISKHNYFCYEIDGDYHKCKMDKYIHR 94



to top

>NU4M_ASTPE (P11992) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 460

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 230 FLSQLYF*LYTLLGSSSISISVHRACFIVTIQLLIEAIELDNY 102
           + + +YF  YTL+GS  + +S+  A F     +++ +I L NY
Sbjct: 144 YQASIYFLFYTLIGSLPLLVSI-IAIFSYENTIILPSIHLTNY 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,089,397
Number of Sequences: 219361
Number of extensions: 399524
Number of successful extensions: 791
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top