ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC122312.3| Mus musculus BAC clone RP23-298K16 from 19, compl... 46 0.062
2emb|AL353653.19| Human DNA sequence from clone RP11-244L4 on chr... 44 0.24
3gb|AC111280.7| Rattus norvegicus 13 BAC CH230-51N9 (Children's H... 44 0.24
4emb|AL731559.8| Human DNA sequence from clone RP11-495F22 on chr... 42 0.96
5emb|BX511086.5| Zebrafish DNA sequence from clone DKEY-38P8 in l... 42 0.96
6gb|AC109808.6| Homo sapiens chromosome 15, clone CTD-2147F2, com... 42 0.96
7gb|AC026523.9| Homo sapiens chromosome 15, clone RP11-461F11, co... 42 0.96
8ref|NM_139168.1| Homo sapiens splicing factor, arginine/serine-r... 40 3.8
9gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
10gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
11gb|BC067770.1| Homo sapiens splicing factor, arginine/serine-ric... 40 3.8
12gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, comp... 40 3.8
13gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome... 40 3.8
14ref|XM_856098.1| PREDICTED: Canis familiaris similar to splicing... 40 3.8
15ref|XM_544361.2| PREDICTED: Canis familiaris similar to splicing... 40 3.8
16emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chr... 40 3.8
17emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; se... 40 3.8
18emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4,... 40 3.8
19gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell... 40 3.8
20dbj|AK125893.1| Homo sapiens cDNA FLJ43905 fis, clone TESTI40104... 40 3.8
21dbj|AK091758.1| Homo sapiens cDNA FLJ34439 fis, clone HLUNG20011... 40 3.8
22gb|AC010054.7| Drosophila melanogaster 3L BAC RP98-15E10 (Roswel... 40 3.8
23dbj|AB168639.1| Macaca fascicularis testis cDNA clone: QtsA-1372... 40 3.8
24gb|AC025442.6| Homo sapiens chromosome 5 clone CTD-2019M3, compl... 40 3.8
25gb|AF268055.1| Candidatus Carsonella ruddii natural-host Glycasp... 40 3.8
26gb|AF227033.1| Setaria faberi FAB5 Ty1 copia-like retrotransposo... 40 3.8
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
33gb|AC068764.18| Homo sapiens 3 BAC RP11-138E24 (Roswell Park Can... 40 3.8
34gb|AC110994.8| Homo sapiens 3 BAC RP11-144C15 (Roswell Park Canc... 40 3.8
35gb|AF459094.1| Homo sapiens splicing factor, arginine/serine-ric... 40 3.8
36gb|AC008772.6|AC008772 Homo sapiens chromosome 5 clone CTD-2016O... 40 3.8
37dbj|AP005925.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
38dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
39dbj|AP005776.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
40dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synth... 40 3.8
41gb|BC112343.1| Homo sapiens splicing factor, arginine/serine-ric... 40 3.8
42gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62... 40 3.8
43dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 3.8
44gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
46emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005... 40 3.8
47emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372... 40 3.8
48gb|AC149312.2| Phakopsora pachyrhizi clone JGIAFNA-101K10, compl... 40 3.8
49emb|AJ342160.1|HSA342160 Homo sapiens genomic sequence surroundi... 40 3.8
50dbj|AP000701.1| Homo sapiens genomic DNA, chromosome 21q22.2, co... 40 3.8 
>gb|AC122312.3| Mus musculus BAC clone RP23-298K16 from 19, complete sequence
          Length = 206657

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 135    ttgaattgtgacaatgaaacatg 157
              |||||||||||||||||||||||
Sbjct: 145916 ttgaattgtgacaatgaaacatg 145938
to top
>emb|AL353653.19| Human DNA sequence from clone RP11-244L4 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 66788

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 190   cctaataaagtataaagttaaa 211
             ||||||||||||||||||||||
Sbjct: 44574 cctaataaagtataaagttaaa 44595
to top
>gb|AC111280.7| Rattus norvegicus 13 BAC CH230-51N9 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216192

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 115    tcaattgcttctatcagcaatt 136
              ||||||||||||||||||||||
Sbjct: 206239 tcaattgcttctatcagcaatt 206260
to top
>emb|AL731559.8| Human DNA sequence from clone RP11-495F22 on chromosome 10 Contains
             part of the gene for CamKI-like protein kinase (CKLiK)
             (LOC221042 LOC283070), complete sequence
          Length = 196320

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 83    tcttgctagcaggtatgttgtagtt 107
             ||||||||||||||||||| |||||
Sbjct: 77404 tcttgctagcaggtatgttttagtt 77428
to top
>emb|BX511086.5| Zebrafish DNA sequence from clone DKEY-38P8 in linkage group 7, complete
              sequence
          Length = 228170

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    aaacatgctctatgtacagat 171
              |||||||||||||||||||||
Sbjct: 192162 aaacatgctctatgtacagat 192142
to top
>gb|AC109808.6| Homo sapiens chromosome 15, clone CTD-2147F2, complete sequence
          Length = 136631

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 201  ataaagttaaaagtaaagttg 221
            |||||||||||||||||||||
Sbjct: 5978 ataaagttaaaagtaaagttg 5998
to top
>gb|AC026523.9| Homo sapiens chromosome 15, clone RP11-461F11, complete sequence
          Length = 175770

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 201    ataaagttaaaagtaaagttg 221
              |||||||||||||||||||||
Sbjct: 171499 ataaagttaaaagtaaagttg 171519
to top
>ref|NM_139168.1| Homo sapiens splicing factor, arginine/serine-rich 12 (SFRS12), mRNA
          Length = 3811

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 1930 tgagagaattaaaagctttggatt 1907
to top
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
             complete sequence
          Length = 117724

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   gtgacaatgaaacatgctctatgt 165
             ||||| ||||||||||||||||||
Sbjct: 23022 gtgacgatgaaacatgctctatgt 23045
to top
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0022E16 map C481S, complete sequence
          Length = 179668

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   gtgacaatgaaacatgctctatgt 165
             ||||| ||||||||||||||||||
Sbjct: 35299 gtgacgatgaaacatgctctatgt 35276
to top
>gb|BC067770.1| Homo sapiens splicing factor, arginine/serine-rich 12, mRNA (cDNA
            clone IMAGE:4827589), with apparent retained intron
          Length = 2449

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 2250 tgagagaattaaaagctttggatt 2227
to top
>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ttaaaagatttggattaaag 42
             ||||||||||||||||||||
Sbjct: 70715 ttaaaagatttggattaaag 70734
to top
>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence
          Length = 245623

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aattaaaagatttggattaa 40
              ||||||||||||||||||||
Sbjct: 235225 aattaaaagatttggattaa 235244
to top
>ref|XM_856098.1| PREDICTED: Canis familiaris similar to splicing factor,
            arginine/serine-rich 12, transcript variant 2
            (LOC487233), mRNA
          Length = 2471

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 1713 tgagagaattaaaagctttggatt 1690
to top
>ref|XM_544361.2| PREDICTED: Canis familiaris similar to splicing factor,
            arginine/serine-rich 12, transcript variant 1
            (LOC487233), mRNA
          Length = 2580

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 1822 tgagagaattaaaagctttggatt 1799
to top
>emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chromosome 13 Contains part
             of the GPC6 gene for glypican 6 and a novel gene, complete
             sequence
          Length = 173736

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   agtataaagttaaaagtaaa 217
             ||||||||||||||||||||
Sbjct: 73305 agtataaagttaaaagtaaa 73324
to top
>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5
          Length = 262202

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     atgagagaattaaaagattt 33
              ||||||||||||||||||||
Sbjct: 101790 atgagagaattaaaagattt 101809
to top
>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07,
             complete sequence
          Length = 138383

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    tatgttgtagttgtctaattcaat 119
             |||||| |||||||||||||||||
Sbjct: 10496 tatgttttagttgtctaattcaat 10519
to top
>gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 174645

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    ataaagttaaaagtaaagtt 220
              ||||||||||||||||||||
Sbjct: 151717 ataaagttaaaagtaaagtt 151698
to top
>dbj|AK125893.1| Homo sapiens cDNA FLJ43905 fis, clone TESTI4010475, weakly  similar
            to Rattus norvegicus serine-arginine-rich splicing
            regulatory protein 86 (Srrp86)
          Length = 3730

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 1781 tgagagaattaaaagctttggatt 1758
to top
>dbj|AK091758.1| Homo sapiens cDNA FLJ34439 fis, clone HLUNG2001146, moderately
            similar to Rattus norvegicus serine-arginine-rich
            splicing regulatory protein SRRP86 mRNA
          Length = 2222

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 1978 tgagagaattaaaagctttggatt 1955
to top
>gb|AC010054.7| Drosophila melanogaster 3L BAC RP98-15E10 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 173109

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   ataaagttaaaagtaaagtt 220
             ||||||||||||||||||||
Sbjct: 51291 ataaagttaaaagtaaagtt 51272
to top
>dbj|AB168639.1| Macaca fascicularis testis cDNA clone: QtsA-13724, similar to human
            splicing factor, arginine/serine-rich 12 (SFRS12), mRNA,
            RefSeq: NM_139168.1
          Length = 2191

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 1929 tgagagaattaaaagctttggatt 1906
to top
>gb|AC025442.6| Homo sapiens chromosome 5 clone CTD-2019M3, complete sequence
          Length = 125949

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 15     tgagagaattaaaagatttggatt 38
              ||||||||||||||| ||||||||
Sbjct: 125234 tgagagaattaaaagctttggatt 125211
to top
>gb|AF268055.1| Candidatus Carsonella ruddii natural-host Glycaspis brimblecombei RNA
            polymerase beta subunit (rpoB) and RNA polymerase
            beta-prime subunit (rpoC) genes, partial cds
          Length = 2724

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   aattaaaagatttggattaa 40
            ||||||||||||||||||||
Sbjct: 1188 aattaaaagatttggattaa 1169
to top
>gb|AF227033.1| Setaria faberi FAB5 Ty1 copia-like retrotransposon, partial
           sequence
          Length = 276

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 40  aagagaatgttgaagataattgcgtttatgcagagttcaaaaat 83
           |||||||| | ||||| ||||| || |||||| |||||||||||
Sbjct: 194 aagagaatatagaagacaattgtgtctatgcaaagttcaaaaat 237
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 96       tatgttgtagttgtctaattcaat 119
                |||||| |||||||||||||||||
Sbjct: 16760065 tatgttttagttgtctaattcaat 16760088
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 142      gtgacaatgaaacatgctctatgt 165
                ||||| ||||||||||||||||||
Sbjct: 15101058 gtgacgatgaaacatgctctatgt 15101035



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 142     gtgacaatgaaacatgctctatgt 165
               ||||| ||||||||||||||||||
Sbjct: 8010757 gtgacgatgaaacatgctctatgt 8010734
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 142      gtgacaatgaaacatgctctatgt 165
                ||||| ||||||||||||||||||
Sbjct: 28076166 gtgacgatgaaacatgctctatgt 28076143
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 142      gtgacaatgaaacatgctctatgt 165
                ||||| ||||||||||||||||||
Sbjct: 14786633 gtgacgatgaaacatgctctatgt 14786610



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 142     gtgacaatgaaacatgctctatgt 165
               ||||| ||||||||||||||||||
Sbjct: 1790834 gtgacgatgaaacatgctctatgt 1790811
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 142      gtgacaatgaaacatgctctatgt 165
                ||||| ||||||||||||||||||
Sbjct: 14294236 gtgacgatgaaacatgctctatgt 14294259
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 142     gtgacaatgaaacatgctctatgt 165
               ||||| ||||||||||||||||||
Sbjct: 2357103 gtgacgatgaaacatgctctatgt 2357126
to top
>gb|AC068764.18| Homo sapiens 3 BAC RP11-138E24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183965

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 189    acctaataaagtataaagttaaaa 212
              |||||||||| |||||||||||||
Sbjct: 183872 acctaataaaatataaagttaaaa 183895
to top
>gb|AC110994.8| Homo sapiens 3 BAC RP11-144C15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 65203

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 189  acctaataaagtataaagttaaaa 212
            |||||||||| |||||||||||||
Sbjct: 1911 acctaataaaatataaagttaaaa 1934
to top
>gb|AF459094.1| Homo sapiens splicing factor, arginine/serine-rich 12 (SFRS12) mRNA,
            complete cds
          Length = 3811

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 1930 tgagagaattaaaagctttggatt 1907
to top
>gb|AC008772.6|AC008772 Homo sapiens chromosome 5 clone CTD-2016O11, complete sequence
          Length = 114992

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    tgagagaattaaaagatttggatt 38
             ||||||||||||||| ||||||||
Sbjct: 71640 tgagagaattaaaagctttggatt 71617
to top
>dbj|AP005925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0030G18
          Length = 167557

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   gtgacaatgaaacatgctctatgt 165
             ||||| ||||||||||||||||||
Sbjct: 78720 gtgacgatgaaacatgctctatgt 78697
to top
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0009H02
          Length = 155388

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   gtgacaatgaaacatgctctatgt 165
             ||||| ||||||||||||||||||
Sbjct: 73195 gtgacgatgaaacatgctctatgt 73172
to top
>dbj|AP005776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0018G11
          Length = 121084

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   gtgacaatgaaacatgctctatgt 165
             ||||| ||||||||||||||||||
Sbjct: 93180 gtgacgatgaaacatgctctatgt 93203
to top
>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds
          Length = 250000

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 196    aaagtataaagttaaaagtaaagt 219
              ||||||||||||||||||| ||||
Sbjct: 123810 aaagtataaagttaaaagtgaagt 123833
to top
>gb|BC112343.1| Homo sapiens splicing factor, arginine/serine-rich 12, mRNA (cDNA
            clone MGC:133045 IMAGE:40008558), complete cds
          Length = 3215

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   tgagagaattaaaagatttggatt 38
            ||||||||||||||| ||||||||
Sbjct: 1618 tgagagaattaaaagctttggatt 1595
to top
>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the complete
              sequence
          Length = 290640

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    ataaagttaaaagtaaagtt 220
              ||||||||||||||||||||
Sbjct: 130185 ataaagttaaaagtaaagtt 130166
to top
>dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, section 71/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 196   aaagtataaagttaaaagtaaagt 219
             ||||||||||||||||||| ||||
Sbjct: 90102 aaagtataaagttaaaagtgaagt 90079
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 142      gtgacaatgaaacatgctctatgt 165
                ||||| ||||||||||||||||||
Sbjct: 28061044 gtgacgatgaaacatgctctatgt 28061021
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 142      gtgacaatgaaacatgctctatgt 165
                ||||| ||||||||||||||||||
Sbjct: 15055341 gtgacgatgaaacatgctctatgt 15055318



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 142     gtgacaatgaaacatgctctatgt 165
               ||||| ||||||||||||||||||
Sbjct: 8010638 gtgacgatgaaacatgctctatgt 8010615
to top
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 151117

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    gtgacaatgaaacatgctctatgt 165
              ||||| ||||||||||||||||||
Sbjct: 132921 gtgacgatgaaacatgctctatgt 132944
to top
>emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372_C12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 113071

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   gtgacaatgaaacatgctctatgt 165
             ||||| ||||||||||||||||||
Sbjct: 40475 gtgacgatgaaacatgctctatgt 40452
to top
>gb|AC149312.2| Phakopsora pachyrhizi clone JGIAFNA-101K10, complete sequence
          Length = 35053

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   aataaagtataaagttaaaa 212
             ||||||||||||||||||||
Sbjct: 23598 aataaagtataaagttaaaa 23617
to top
>emb|AJ342160.1|HSA342160 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ6-AP5C
          Length = 800

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 134 attgaattgtgacaatgaaa 153
           ||||||||||||||||||||
Sbjct: 371 attgaattgtgacaatgaaa 352
to top
>dbj|AP000701.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:Q41G5,
            CBR1-HLCS region
          Length = 44185

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 196  aaagtataaagttaaaagtaaagt 219
            ||||||||||||||||||| ||||
Sbjct: 9402 aaagtataaagttaaaagtgaagt 9379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,911,578
Number of Sequences: 3902068
Number of extensions: 2911578
Number of successful extensions: 58004
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57789
Number of HSP's gapped (non-prelim): 215
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top