ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPK_BACHD (Q9KD27) Polyphosphate kinase (EC 2.7.4.1) (Polyphosph... 30 1.0
2SSB_WIGBR (Q8D254) Single-stranded DNA-binding protein (SSB) (He... 29 3.0
3STAP2_MOUSE (Q8R0L1) Signal-transducing adaptor protein 2 (STAP-2) 28 4.0
4LIPP_PIG (P00591) Pancreatic triacylglycerol lipase (EC 3.1.1.3)... 28 4.0
5SSB_BRAJA (Q89L50) Single-stranded DNA-binding protein (SSB) (He... 27 8.8
6STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form ... 27 8.8

>PPK_BACHD (Q9KD27) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid|
           kinase) (ATP-polyphosphate phosphotransferase)
          Length = 705

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +1

Query: 19  IPSIHPYKIRQFTPFPVHERSQRDPLQPTRSEIRMGRKRRRILHGFFTGTNATDSLSFLV 198
           + S+ P++I +    P+HE   RD L+    E++  +    +      G    + L  L+
Sbjct: 232 VKSVSPFRITRNADLPIHEEGARDLLREIEKELKKRKWGAAVRLEMQEGLMDPNVLKLLL 291

Query: 199 NLRHIFKQNV 228
           ++  I K +V
Sbjct: 292 DVLEIHKNDV 301



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>SSB_WIGBR (Q8D254) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 163

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 39  QDQAIHTISSP*TVTERSITTYQV-RDKNGEEEKENTTWLFYRDERHRFIVF 191
           QD  +  I +   +T  S+ T +  RDKN  E KE T W       HR I+F
Sbjct: 17  QDPEVRYIPNGNAITNLSLATSENWRDKNTGESKEKTEW-------HRVILF 61



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>STAP2_MOUSE (Q8R0L1) Signal-transducing adaptor protein 2 (STAP-2)|
          Length = 411

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 317 GGLQGGGSDLLRVVGDGLAELEEQLRVRRA 406
           GG     S L+  +GD  AELEE+L+ RRA
Sbjct: 379 GGSSSQASSLVTRLGDITAELEEKLQKRRA 408



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>LIPP_PIG (P00591) Pancreatic triacylglycerol lipase (EC 3.1.1.3) (Pancreatic|
           lipase) (PL)
          Length = 450

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 88  DPLQPTRSEIRMGRKRRRILHGF 156
           DP   T S  RM RK R I+HGF
Sbjct: 56  DPSTITNSNFRMDRKTRFIIHGF 78



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>SSB_BRAJA (Q89L50) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 164

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 78  VTERSITTYQV-RDKNGEEEKENTTWLFYRDERHRFIVFS 194
           +   SI T +  RDKN  E KE T W       HR ++F+
Sbjct: 29  IANLSIATSETWRDKNSGERKEKTEW-------HRVVIFN 61



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>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]|
          Length = 2559

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 GCNGSLCDRSWTGNGVNCL 45
           G    +C R WTGNG +C+
Sbjct: 899 GTYSCVCQRGWTGNGRDCV 917


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,398,093
Number of Sequences: 219361
Number of extensions: 781986
Number of successful extensions: 2128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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