ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RRN3_HUMAN (Q9NYV6) RNA polymerase I-specific transcription init... 28 4.2
2Y1187_METJA (Q58588) Hypothetical protein MJ1187 28 5.5
3RELX_HORSE (P22969) Prorelaxin precursor (RXN) [Contains: Relaxi... 27 9.4

>RRN3_HUMAN (Q9NYV6) RNA polymerase I-specific transcription initiation factor|
           RRN3 (Transcription initiation factor IA) (TIF-IA)
          Length = 651

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 246 EDDDLHIVRFSLMDPQVNGNIDFNWLLWERKYCFWLVTGFATL 118
           E +D  +++  L+DP +  +   NWLL  R    +L   F  L
Sbjct: 67  ETNDFELLKNQLLDPDIKDDQIINWLLEFRSSIMYLTKDFEQL 109



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>Y1187_METJA (Q58588) Hypothetical protein MJ1187|
          Length = 301

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 48  QKMCLTHD*SELGIDLIKFSDCWVEWR 128
           Q +CL    ++ GID+ KF++C + W+
Sbjct: 65  QAICLIKSLTKEGIDIKKFANCLIAWK 91



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>RELX_HORSE (P22969) Prorelaxin precursor (RXN) [Contains: Relaxin B chain;|
           Relaxin A chain]
          Length = 182

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 331 DQKARRPFLRPSWQTLIEPPVIRNDNL 251
           +QKA     +PSW+ L++ P +++ NL
Sbjct: 97  EQKATLSERQPSWRELLQQPALKDSNL 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,690,749
Number of Sequences: 219361
Number of extensions: 944799
Number of successful extensions: 1936
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1936
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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