ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466651.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
2gb|AC102575.11| Mus musculus chromosome 14, clone RP23-239P22, c... 42 1.2
3gb|AC129312.6| Mus musculus BAC clone RP24-405K6 from chromosome... 42 1.2
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
5emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in... 42 1.2
6dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
7dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
8dbj|AK100424.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
9gb|AC135863.4| Mus musculus BAC clone RP23-453H18 from 1, comple... 42 1.2
10gb|AY466342.1| Litopenaeus vannamei microsatellite TUMXLV9.170 s... 40 4.8
11gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer... 40 4.8
12dbj|AK030271.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 4.8
13emb|BX284619.11| Zebrafish DNA sequence from clone DKEY-251E24 i... 40 4.8
14dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
15dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
16emb|BX005212.7| Zebrafish DNA sequence from clone DKEY-221H2 in ... 40 4.8 
>ref|XM_466651.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2967

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 167  agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 225
            |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 2902 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 2844

                                     
Query: 226  tatatgcaagtcatcatcttcacag 250
            |||||| |||||  |||||| ||||
Sbjct: 2843 tatatgaaagtccacatctttacag 2819
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>gb|AC102575.11| Mus musculus chromosome 14, clone RP23-239P22, complete sequence
          Length = 238123

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     tcagaacttggaatagatctt 95
              |||||||||||||||||||||
Sbjct: 176935 tcagaacttggaatagatctt 176955
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>gb|AC129312.6| Mus musculus BAC clone RP24-405K6 from chromosome 1, complete sequence
          Length = 197135

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     ataacacactgattgtaaaag 27
             |||||||||||||||||||||
Sbjct: 11729 ataacacactgattgtaaaag 11709
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                            
Query: 167      agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 225
                |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 23885985 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 23886043

                                         
Query: 226      tatatgcaagtcatcatcttcacag 250
                |||||| |||||  |||||| ||||
Sbjct: 23886044 tatatgaaagtccacatctttacag 23886068



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 29       aacaaatagcactcattcgcaaaa 52
                |||||||||||||||||| |||||
Sbjct: 22360367 aacaaatagcactcattcacaaaa 22360390
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>emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in linkage group 23,
              complete sequence
          Length = 180590

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 8      taacacactgattgtaaaagcaaca 32
              |||||||||||||| ||||||||||
Sbjct: 153007 taacacactgattgaaaaagcaaca 153031
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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                          
Query: 167    agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 225
              |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 107651 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 107709

                                       
Query: 226    tatatgcaagtcatcatcttcacag 250
              |||||| |||||  |||||| ||||
Sbjct: 107710 tatatgaaagtccacatctttacag 107734
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                         
Query: 167   agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 225
             |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 19949 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 20007

                                      
Query: 226   tatatgcaagtcatcatcttcacag 250
             |||||| |||||  |||||| ||||
Sbjct: 20008 tatatgaaagtccacatctttacag 20032
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>dbj|AK100424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B16, full
            insert sequence
          Length = 2967

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 167  agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 225
            |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 2902 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 2844

                                     
Query: 226  tatatgcaagtcatcatcttcacag 250
            |||||| |||||  |||||| ||||
Sbjct: 2843 tatatgaaagtccacatctttacag 2819
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>gb|AC135863.4| Mus musculus BAC clone RP23-453H18 from 1, complete sequence
          Length = 197162

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    ataacacactgattgtaaaag 27
            |||||||||||||||||||||
Sbjct: 9552 ataacacactgattgtaaaag 9572
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>gb|AY466342.1| Litopenaeus vannamei microsatellite TUMXLV9.170 sequence
          Length = 692

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 aacagtattttctctcccat 166
           ||||||||||||||||||||
Sbjct: 302 aacagtattttctctcccat 283
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>gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 107650

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   caaaaacagtattttctctc 162
             ||||||||||||||||||||
Sbjct: 48975 caaaaacagtattttctctc 48956
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>dbj|AK030271.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933440I24 product:unclassifiable, full
           insert sequence
          Length = 2394

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 90  gatcttataaaattctcagattgt 113
           |||||||||||||||||| |||||
Sbjct: 756 gatcttataaaattctcaaattgt 733
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>emb|BX284619.11| Zebrafish DNA sequence from clone DKEY-251E24 in linkage group 1,
             complete sequence
          Length = 196931

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 76    cagaacttggaatagatcttataaaatt 103
             ||||||||||| ||||||| ||||||||
Sbjct: 93203 cagaacttggattagatctgataaaatt 93230
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>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1267B06
          Length = 156989

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     aacaaatagcactcattcgcaaaa 52
              |||||||||||||||||| |||||
Sbjct: 119011 aacaaatagcactcattcacaaaa 119034
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>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_A05
          Length = 113326

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    aacaaatagcactcattcgcaaaa 52
             |||||||||||||||||| |||||
Sbjct: 16586 aacaaatagcactcattcacaaaa 16609
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>emb|BX005212.7| Zebrafish DNA sequence from clone DKEY-221H2 in linkage group 1, complete
              sequence
          Length = 272535

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 76     cagaacttggaatagatcttataaaatt 103
              ||||||||||| ||||||| ||||||||
Sbjct: 110601 cagaacttggattagatctgataaaatt 110628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,000,636
Number of Sequences: 3902068
Number of extensions: 3000636
Number of successful extensions: 58658
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 58609
Number of HSP's gapped (non-prelim): 48
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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