ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl18h08 |
|---|---|
| Clone Library Name | barley_pub |
>NX22A_BRARE (Q90481) Homeobox protein Nkx-2.2a (Homeobox protein NK-2 homolog| B) Length = 269 Score = 30.8 bits (68), Expect = 0.89 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = +1 Query: 67 TTERKEDTTCKAERQVTSETGNAPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSH 234 T+ D+ K +R+V LE + + R+ PE ++L TPTQ Sbjct: 115 TSSNGSDSGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKI 171 Query: 235 LFLHHRFLSKKASSWKGVGRDH 300 F +HR+ K+A + KG+ H Sbjct: 172 WFQNHRYKMKRARAEKGMEVTH 193
>HNK2_XENLA (P42587) Homeobox protein XENK-2| Length = 196 Score = 29.6 bits (65), Expect = 2.0 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +1 Query: 85 DTTCKAERQVTSETGNAPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 252 D+ K +R+V LE + + R+ PE ++L TPTQ F +HR Sbjct: 65 DSGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 121 Query: 253 FLSKKASSWKGV 288 + K+A S KG+ Sbjct: 122 YKMKRARSEKGM 133
>PYRD1_SACKL (Q7Z892) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = -3 Query: 161 FSLACSSVGALPVSLVTCLSA----LHVVSSFRSVVARPNNFYSGLMYFYIR 18 F + + LP+S V C+++ L++ SVV +P N + G+ Y++ Sbjct: 177 FDIMAGILNQLPLSYVNCINSIGNGLYINVETESVVVKPKNGFGGIGGEYVK 228
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = +1 Query: 166 KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKG 285 + R+ PE ++L TPTQ F +HR+ +K+A + KG Sbjct: 565 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 608
>NKX22_MOUSE (P42586) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)| Length = 273 Score = 28.1 bits (61), Expect = 5.8 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Frame = +1 Query: 85 DTTCKAERQVTSETGNAPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 252 D K +R+V LE + + R+ PE ++L TPTQ F +HR Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180 Query: 253 FLSKKASSWKGV 288 + K+A + KG+ Sbjct: 181 YKMKRARAEKGM 192
>NKX22_MESAU (P43697) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)| Length = 273 Score = 28.1 bits (61), Expect = 5.8 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Frame = +1 Query: 85 DTTCKAERQVTSETGNAPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 252 D K +R+V LE + + R+ PE ++L TPTQ F +HR Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180 Query: 253 FLSKKASSWKGV 288 + K+A + KG+ Sbjct: 181 YKMKRARAEKGM 192
>NKX22_HUMAN (O95096) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)| Length = 273 Score = 28.1 bits (61), Expect = 5.8 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Frame = +1 Query: 85 DTTCKAERQVTSETGNAPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 252 D K +R+V LE + + R+ PE ++L TPTQ F +HR Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180 Query: 253 FLSKKASSWKGV 288 + K+A + KG+ Sbjct: 181 YKMKRARAEKGM 192
>UL24_SHV21 (Q01005) Gene 20 protein| Length = 303 Score = 28.1 bits (61), Expect = 5.8 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Frame = +3 Query: 105 KTSNERDR*R-ANARTCKAERQKHETLKGTR---NTVSQSNANTNFTS 236 K SN++ R R ANAR CK ++ ++ L+ R VS+ T+F+S Sbjct: 242 KKSNDQLRARQANARPCKKKQHNNKRLRNNRKHGGKVSRLTTTTSFSS 289
>FDHE_AQUAE (O67150) Protein fdhE homolog| Length = 283 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 281 FHDEAFFDKKRWCKNRCEVC 222 F D+ F+ +RW KN C VC Sbjct: 151 FADKVKFEHERWFKNYCPVC 170
>HISX_BLOFL (Q7VQX0) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 437 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 307 RCNDLSQLPSMMRPFLTKNGGVRIDVKFVL 218 RC+ QL + RP N + +DVK++L Sbjct: 14 RCSISEQLTLLTRPINKHNNSIHLDVKYIL 43
>HSDR_STAAN (Q7A801) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 27.3 bits (59), Expect = 9.9 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -3 Query: 269 AFFDKKRWCKNRCEV 225 +F DKK WCKN+ +V Sbjct: 95 SFLDKKSWCKNKFQV 109
>HSDR_STAAM (Q99X26) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 27.3 bits (59), Expect = 9.9 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -3 Query: 269 AFFDKKRWCKNRCEV 225 +F DKK WCKN+ +V Sbjct: 95 SFLDKKSWCKNKFQV 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,389,538 Number of Sequences: 219361 Number of extensions: 945895 Number of successful extensions: 2542 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2489 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2542 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
