ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl18h07 |
|---|---|
| Clone Library Name | barley_pub |
>CYLD_HUMAN (Q9NQC7) Probable ubiquitin carboxyl-terminal hydrolase CYLD (EC| 3.1.2.15) (Ubiquitin thioesterase CYLD) (Ubiquitin-specific-processing protease CYLD) (Deubiquitinating enzyme CYLD) Length = 956 Score = 31.2 bits (69), Expect = 0.65 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 200 VPTAQDSVTRSRRATQWRLLSDGVGRRNAGRGRSCCAAGSASGPWRPQRA 349 +P +SVT+ RR + +S GVG + + A GS S P R+ Sbjct: 303 IPALSESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRS 352
>EMSY_BRARE (Q7ZUV7) Protein EMSY| Length = 1173 Score = 31.2 bits (69), Expect = 0.65 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -1 Query: 307 TTAPPSARVPATNSVAEKTPLRCPPAPGDAVLSS 206 T+ PPSA P+++S A K+P PA VL S Sbjct: 151 TSTPPSASAPSSSSAAVKSPRPASPASNVVVLPS 184
>TRUA_MYCTU (P65846) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 297 Score = 30.8 bits (68), Expect = 0.84 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = +2 Query: 62 VHNFSSVTRH--GNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTRSR 235 +H+F++ RH G TI D QR+ + T + F + R++ A +V R Sbjct: 185 LHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHR 244 Query: 236 RATQW-RLLSDGVGR 277 RAT W R L GR Sbjct: 245 RATTWCRELLTATGR 259
>TRUA_MYCBO (P65847) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 297 Score = 30.8 bits (68), Expect = 0.84 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = +2 Query: 62 VHNFSSVTRH--GNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTRSR 235 +H+F++ RH G TI D QR+ + T + F + R++ A +V R Sbjct: 185 LHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHR 244 Query: 236 RATQW-RLLSDGVGR 277 RAT W R L GR Sbjct: 245 RATTWCRELLTATGR 259
>YQCA_BACSU (P45936) Hypothetical protein yqcA| Length = 192 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +3 Query: 165 YLPFFTCYLKEPCQLLRTASPGAGGQRSGVFSATELVAGTRAEGGAVVQQDQLQAP 332 YLP F LKE +LL+ +P Q + +F T+ + T A G + L P Sbjct: 10 YLPPFLTKLKEMAELLKAEAPEFEKQNNSIFDLTDQLFVTTATWGLERWEKILNVP 65
>GCP4_DROME (Q9VKU7) Gamma-tubulin complex component 4 homolog (Gamma ring| complex protein 75) (dGrip75) Length = 650 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/62 (24%), Positives = 32/62 (51%) Frame = +2 Query: 5 LKRKLCHVHILSRLPTCITVHNFSSVTRHGNHTISDRQRVSLQGSKNSFTRRFVSAIFHM 184 ++ + +H+L+ L C+ +HN HG+ + ++ ++ KN+ F S++ H Sbjct: 129 MRNLITEIHVLN-LRGCVLLHNLHQQCEHGDIQLEKAIKIIMKPVKNA----FFSSLAHW 183 Query: 185 LL 190 LL Sbjct: 184 LL 185
>FGRL1_RAT (Q7TQM3) Fibroblast growth factor receptor-like 1 precursor (FGF| receptor-like protein 1) Length = 529 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Frame = +3 Query: 192 KEPCQLLRTAS------PGAGGQRSGVFSATELVAGTRAEGGAVVQQDQLQAPGVLNGPR 353 K+PC T PG +RSG L G E G+ + + APG GP+ Sbjct: 399 KKPCAPASTLPVPGHRPPGTSRERSGDKDLPSLAVGICEEHGSTMAPQHILAPGSTAGPK 458
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +2 Query: 203 PTAQDSVTRSRRATQWRLLSDGVGR-RNAGRGRSCCAAGSASGPWRPQ 343 P D S+ Q R S G GR R GRG+S GPWRP+ Sbjct: 291 PPICDPPQPSKTQGQSRGQSRGRGRGRGRGRGKSRDKQRKPGGPWRPE 338
>E41L4_BRARE (O57457) Band 4.1-like protein 4 (Nbl4 protein)| Length = 619 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Frame = +2 Query: 53 CITVHNFSSVTRHGNHTISDR-QRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTR 229 C+ H F + + +++++ + + S GSK+ ++ + I E T+P A V R Sbjct: 288 CVEHHTFFRMPENESNSLTRKLSKFSSLGSKHRYSGKTAMQIGRESTE-TLPRADLQVIR 346 Query: 230 SRRATQWRLLSDGVGRRNAGR 292 +R T + + GR N G+ Sbjct: 347 TRSKTYPKRSTQPAGRNNGGQ 367
>VE2_HPV08 (P06422) Regulatory protein E2| Length = 498 Score = 28.5 bits (62), Expect = 4.2 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 5/114 (4%) Frame = +2 Query: 38 SRLPTCITVHNFSSVTRHGNHTISDRQRVSLQGS----KNSFTRRFVSAIFHMLLERTVP 205 SR T + S V G+ T+S + SL + S +R +A R P Sbjct: 267 SRHRTRSRSRSLSRVRAVGSTTVSRSRSSSLTKAVRPRSRSRSRGRATATSRRRAGRGSP 326 Query: 206 TAQDSVTRSRRATQWRLLSDGVGRRNAGRG-RSCCAAGSASGPWRPQRASGQHS 364 + S +RS ++ G GRR GRG R S++ P +R+ G+ S Sbjct: 327 RRRRSTSRSPSTNTFKRSQRGGGRRGRGRGSRGRRERSSSTSPTPTKRSRGESS 380
>CS029_MOUSE (Q9CS00) Protein C19orf29 homolog| Length = 772 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +1 Query: 193 KNRANCSGQRHQEQEGNAVASSQRRSWSP 279 +N+++CS + +G+ RRSWSP Sbjct: 105 QNQSSCSDSGEERAQGSWARKGHRRSWSP 133
>STE11_SCHPO (P36631) Transcription factor ste11| Length = 468 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +1 Query: 193 KNRANCSGQRHQEQEGNAVASSQRRSWSPERGQREELL-CSRISFRPLASS 342 +N +NCS +R + + S Q S SPE + L CS I RP S Sbjct: 257 QNSSNCSARRVPKFDSKGTVSEQSNSDSPELSADKVLSHCSPIDARPSTPS 307
>GATA_SYNEL (Q8DK65) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 482 Score = 28.1 bits (61), Expect = 5.5 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = +2 Query: 185 LLERTVPTAQDSVTRSRRATQWRLLSDGVGRRNA-----GRGRSCCAAGSASGPWRPQRA 349 +LE VP + +VT +A + VG+ N G A G + PW P+R Sbjct: 91 MLEHFVPPYESTVTEKLQAAGAIM----VGKTNLDEFAMGSSTENSAFGFTANPWNPERV 146 Query: 350 SGQHS 364 SG S Sbjct: 147 SGGSS 151
>FRAT1_HUMAN (Q92837) Proto-oncogene FRAT1 (Frequently rearranged in advanced| T-cell lymphomas) (Frat-1) Length = 279 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = -1 Query: 355 PRGPLRTPGA*S*SCCTTAPPSARVPATNSVAEKTPLRCPPAPGDAV 215 P PLR PG P +A VPA + + PL PPA + V Sbjct: 67 PGAPLRAPG----------PLAAAVPADKARSPAVPLLLPPALAETV 103
>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) Length = 5085 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -1 Query: 349 GPLRTPGA*S*SCCTTAPPSARVPATNSVAEKTPLRCPPAPGDAVLSSWHGSF 191 GP ++P + + + A P A+ P + EKT P P + HG F Sbjct: 287 GPAKSPAQPAGTGKSPAQPPAKTPGQQAGLEKTSSSQQPGPKSLAQTPGHGKF 339
>LIP2_STAAR (Q6GJZ6) Lipase 2 precursor (EC 3.1.1.3) (Glycerol ester hydrolase| 2) Length = 691 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = -1 Query: 301 APPSARVPATNSVAEKTPLRCPPAPGDAVLSSWHGSFK----*HVKNGRYKT 158 A S ++P TN+ A+K L P G+A+ S S K H +NG+ T Sbjct: 35 AQASEKIPTTNAAAQKETLNQPGEQGNAITSHQMQSGKQLDDMHKENGKSGT 86
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 298 PPSARVPATNSVAEKTPLRCPPAPGDAVLS 209 PP+ + NS AEKTP + P P LS Sbjct: 2404 PPAESLSQENSAAEKTPCKAPVLPALPPLS 2433
>GRFA_MYXVL (P08072) Growth factor precursor (Secreted epidermal growth| factor-like) Length = 85 Score = 27.7 bits (60), Expect = 7.2 Identities = 8/31 (25%), Positives = 16/31 (51%) Frame = +1 Query: 91 WQSYHIRQTACFTARIKELVYQAFCICHFSH 183 +++Y + CFT + + FC CH ++ Sbjct: 41 YKNYCLNNGTCFTVALNNVSLNPFCACHINY 71
>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 484 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/38 (28%), Positives = 24/38 (63%) Frame = +3 Query: 21 VMFTFSLVFQLASQFTTSHQSPGMAIIPYQTDSVFHCK 134 V + F+ +Q+++Q ++ + PG++I+ + SV CK Sbjct: 410 VSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCK 447
>XKDU_BACSU (P54340) Phage-like element PBSX protein xkdU| Length = 192 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 165 YLPFFTCYLKEPCQLLRTASPGAGGQRSGVFSATE 269 YLP F LKE +LL+ +P Q +F T+ Sbjct: 10 YLPPFLTSLKEMAELLKAEAPEFDKQNDSIFDLTD 44
>LPXK_XANAC (Q8PKS4) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 345 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = -1 Query: 367 GGMLPRGPLRTPGA*S*SCCTTAPPSARVPATNSVAEKTPLRCPPAPGDAVLSSW 203 G +LP GPLR P A + C + AT + P AP DA W Sbjct: 177 GRLLPAGPLREPAARAQDCDFRVVNLGQASATAT---------PQAPDDAGFGKW 222
>CYLD_MOUSE (Q80TQ2) Probable ubiquitin carboxyl-terminal hydrolase CYLD (EC| 3.1.2.15) (Ubiquitin thioesterase CYLD) (Ubiquitin specific-processing protease CYLD) (Deubiquitinating enzyme CYLD) Length = 952 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 215 DSVTRSRRATQWRLLSDGVGRRNAGRGRSCCAAGSASGPWRPQRA 349 DSVT+ RR + +S GVG + + GS S P R+ Sbjct: 305 DSVTQERRPPKLAFMSRGVGDKGSSSHNKPKVTGSTSDPGSRNRS 349
>S38A3_MOUSE (Q9DCP2) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) (mNAT) Length = 505 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/52 (23%), Positives = 24/52 (46%) Frame = +2 Query: 53 CITVHNFSSVTRHGNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLLERTVPT 208 C HN ++ T + +H + ++ LQG ++ F + + L +T T Sbjct: 239 CPLAHNLANATGNFSHMVVAEEKAQLQGEPDTAAEAFCTPSYFTLNSQTAYT 290
>SI1L2_RAT (Q5JCS6) Signal-induced proliferation-associated 1-like protein 2| (Serine-rich synapse-associated protein) Length = 1722 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +2 Query: 203 PTAQDSVTRSRRATQW-RLLSDGVGRRNAGRGRSCCAAGSASGPWRPQ 343 P Q + R+T + R L DG + + S SGPWRPQ Sbjct: 1095 PLLQQAQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQ 1142
>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2| Length = 1722 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +2 Query: 203 PTAQDSVTRSRRATQW-RLLSDGVGRRNAGRGRSCCAAGSASGPWRPQ 343 P Q + R+T + R L DG + + S SGPWRPQ Sbjct: 1095 PLLQQAQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQ 1142
>THAP7_HUMAN (Q9BT49) THAP domain-containing protein 7| Length = 309 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = +2 Query: 176 FHMLLERTVPTAQDSVTRSRRATQWRLLSDGVGRRNAGRGRSC---CAAGSASGPWRP 340 +H L E VPT +S ++ RR T+ + S G R R C C+ G GP P Sbjct: 81 YHRLKEGAVPTIFESFSKLRRTTKTKGHSYPPGPPEVSRLRRCRKRCSEG--RGPTTP 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,040,124 Number of Sequences: 219361 Number of extensions: 1080005 Number of successful extensions: 3611 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3607 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
