ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
2gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AK099115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
5dbj|AK064084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
8dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
9emb|CT010581.10| Mouse DNA sequence from clone RP23-104J14 on ch... 42 1.2
10gb|AC154814.2| Mus musculus BAC clone RP24-532L22 from 16, compl... 42 1.2
11emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in ... 42 1.2
12ref|XM_365485.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 4.9
13gb|AC079741.5| Homo sapiens BAC clone CTD-2252G20 from 7, comple... 40 4.9
14gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, comp... 40 4.9
15gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-... 40 4.9
16gb|AC159240.3| Mus musculus BAC clone RP24-555M20 from chromosom... 40 4.9
17emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 40 4.9
18emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in... 40 4.9
19emb|CR792423.5| Zebrafish DNA sequence from clone CH211-190H10 i... 40 4.9
20emb|CR388095.8| Zebrafish DNA sequence from clone CH211-199M9 in... 40 4.9
21emb|BX005193.17| Zebrafish DNA sequence from clone CH211-146M5, ... 40 4.9
22gb|AC016597.4|AC016597 Homo sapiens chromosome 16 clone CTD-2049... 40 4.9
23emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in ... 40 4.9
24emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chr... 40 4.9
25gb|AC145559.4| Mus musculus BAC clone RP23-371A1 from 5, complet... 40 4.9
26emb|AL691505.12| Mouse DNA sequence from clone RP23-82B19 on chr... 40 4.9
27emb|AL772215.8| Mouse DNA sequence from clone RP23-114N20 on chr... 40 4.9

>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 304   ttgtgcagcaggatcagcttcaggcccctggcg 336
             ||||||||||||||||||||||||||| |||||
Sbjct: 81491 ttgtgcagcaggatcagcttcaggcccttggcg 81523



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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0055G24 map S20116S, complete sequence
          Length = 174210

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 304  ttgtgcagcaggatcagcttcaggcccctggcg 336
            ||||||||||||||||||||||||||| |||||
Sbjct: 4673 ttgtgcagcaggatcagcttcaggcccttggcg 4705



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                
Query: 304     ttgtgcagcaggatcagcttcaggcccctggcg 336
               ||||||||||||||||||||||||||| |||||
Sbjct: 3487536 ttgtgcagcaggatcagcttcaggcccttggcg 3487568



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>dbj|AK099115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C07, full
            insert sequence
          Length = 3784

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 304  ttgtgcagcaggatcagcttcaggcccctggcg 336
            ||||||||||||||||||||||||||| |||||
Sbjct: 3489 ttgtgcagcaggatcagcttcaggcccttggcg 3457



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>dbj|AK064084.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B10, full
            insert sequence
          Length = 1705

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 304  ttgtgcagcaggatcagcttcaggcccctggcg 336
            ||||||||||||||||||||||||||| |||||
Sbjct: 1446 ttgtgcagcaggatcagcttcaggcccttggcg 1414



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                
Query: 304     ttgtgcagcaggatcagcttcaggcccctggcg 336
               ||||||||||||||||||||||||||| |||||
Sbjct: 3496240 ttgtgcagcaggatcagcttcaggcccttggcg 3496272



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 35       ctctctcgtcttccaacttgcatcac 60
                ||||||||||||||||||||||||||
Sbjct: 28961613 ctctctcgtcttccaacttgcatcac 28961588



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>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 35    ctctctcgtcttccaacttgcatcac 60
             ||||||||||||||||||||||||||
Sbjct: 79150 ctctctcgtcttccaacttgcatcac 79125



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>emb|CT010581.10| Mouse DNA sequence from clone RP23-104J14 on chromosome 16, complete
             sequence
          Length = 218225

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    tcatgttcacattctctctcg 42
             |||||||||||||||||||||
Sbjct: 77794 tcatgttcacattctctctcg 77814



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>gb|AC154814.2| Mus musculus BAC clone RP24-532L22 from 16, complete sequence
          Length = 155332

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    tcatgttcacattctctctcg 42
             |||||||||||||||||||||
Sbjct: 95871 tcatgttcacattctctctcg 95891



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>emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in linkage group 20,
             complete sequence
          Length = 212105

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 222   tcaccaggagcaggagggcaacgca 246
             |||||||||||||||| ||||||||
Sbjct: 67817 tcaccaggagcaggagagcaacgca 67841



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>ref|XM_365485.1| Magnaporthe grisea 70-15 predicted protein (MG02187.4) partial mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 aacgcgggcagagggaggag 300
           ||||||||||||||||||||
Sbjct: 370 aacgcgggcagagggaggag 389



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>gb|AC079741.5| Homo sapiens BAC clone CTD-2252G20 from 7, complete sequence
          Length = 36722

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ggcagagggaggagctgttg 306
             ||||||||||||||||||||
Sbjct: 20039 ggcagagggaggagctgttg 20058



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>gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, complete sequence
          Length = 188333

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    ggcagagggaggagctgttg 306
              ||||||||||||||||||||
Sbjct: 177641 ggcagagggaggagctgttg 177660



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>gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-A-951C11, complete sequence
          Length = 114411

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      ttttaaaacgtaaactttgt 22
              ||||||||||||||||||||
Sbjct: 106415 ttttaaaacgtaaactttgt 106396



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>gb|AC159240.3| Mus musculus BAC clone RP24-555M20 from chromosome 5, complete sequence
          Length = 197104

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    ttctcatcagtcaccaggca 90
             ||||||||||||||||||||
Sbjct: 85481 ttctcatcagtcaccaggca 85500



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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   gtcaccaggagcaggagggc 240
             ||||||||||||||||||||
Sbjct: 35586 gtcaccaggagcaggagggc 35567



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>emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in linkage group 13,
             complete sequence
          Length = 157140

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    ttgtcatgttcacattctct 38
             ||||||||||||||||||||
Sbjct: 63773 ttgtcatgttcacattctct 63792



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>emb|CR792423.5| Zebrafish DNA sequence from clone CH211-190H10 in linkage group 5,
             complete sequence
          Length = 154548

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   ctgccatttttcacatgcta 187
             ||||||||||||||||||||
Sbjct: 21823 ctgccatttttcacatgcta 21804



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>emb|CR388095.8| Zebrafish DNA sequence from clone CH211-199M9 in linkage group 14,
             complete sequence
          Length = 208632

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tttcactgcaaggatcaaag 142
             ||||||||||||||||||||
Sbjct: 42732 tttcactgcaaggatcaaag 42751



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>emb|BX005193.17| Zebrafish DNA sequence from clone CH211-146M5, complete sequence
          Length = 169110

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   aggagggcaacgcagtggcg 252
             ||||||||||||||||||||
Sbjct: 12778 aggagggcaacgcagtggcg 12759



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>gb|AC016597.4|AC016597 Homo sapiens chromosome 16 clone CTD-2049O4, complete sequence
          Length = 129338

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      ttttaaaacgtaaactttgt 22
              ||||||||||||||||||||
Sbjct: 106030 ttttaaaacgtaaactttgt 106049



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>emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in linkage group 13,
            complete sequence
          Length = 190607

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  aggagggcaacgcagtggcg 252
            ||||||||||||||||||||
Sbjct: 4356 aggagggcaacgcagtggcg 4375



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>emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chromosome 2, complete
              sequence
          Length = 187665

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    gttttgtatctgccattttt 178
              ||||||||||||||||||||
Sbjct: 142920 gttttgtatctgccattttt 142939



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>gb|AC145559.4| Mus musculus BAC clone RP23-371A1 from 5, complete sequence
          Length = 203726

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    ttctcatcagtcaccaggca 90
             ||||||||||||||||||||
Sbjct: 21651 ttctcatcagtcaccaggca 21632



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>emb|AL691505.12| Mouse DNA sequence from clone RP23-82B19 on chromosome 10, complete
              sequence
          Length = 220450

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    gcagagggaggagctgttgt 307
              ||||||||||||||||||||
Sbjct: 167018 gcagagggaggagctgttgt 167037



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>emb|AL772215.8| Mouse DNA sequence from clone RP23-114N20 on chromosome 2, complete
             sequence
          Length = 187537

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggttttaaaacgtaaacttt 20
             ||||||||||||||||||||
Sbjct: 53333 ggttttaaaacgtaaacttt 53352


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,229,497
Number of Sequences: 3902068
Number of extensions: 3229497
Number of successful extensions: 62631
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62502
Number of HSP's gapped (non-prelim): 129
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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