Clone Name | rbastl18h07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 304 ttgtgcagcaggatcagcttcaggcccctggcg 336 ||||||||||||||||||||||||||| ||||| Sbjct: 81491 ttgtgcagcaggatcagcttcaggcccttggcg 81523
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 304 ttgtgcagcaggatcagcttcaggcccctggcg 336 ||||||||||||||||||||||||||| ||||| Sbjct: 4673 ttgtgcagcaggatcagcttcaggcccttggcg 4705
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 304 ttgtgcagcaggatcagcttcaggcccctggcg 336 ||||||||||||||||||||||||||| ||||| Sbjct: 3487536 ttgtgcagcaggatcagcttcaggcccttggcg 3487568
>dbj|AK099115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C07, full insert sequence Length = 3784 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 304 ttgtgcagcaggatcagcttcaggcccctggcg 336 ||||||||||||||||||||||||||| ||||| Sbjct: 3489 ttgtgcagcaggatcagcttcaggcccttggcg 3457
>dbj|AK064084.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B10, full insert sequence Length = 1705 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 304 ttgtgcagcaggatcagcttcaggcccctggcg 336 ||||||||||||||||||||||||||| ||||| Sbjct: 1446 ttgtgcagcaggatcagcttcaggcccttggcg 1414
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 304 ttgtgcagcaggatcagcttcaggcccctggcg 336 ||||||||||||||||||||||||||| ||||| Sbjct: 3496240 ttgtgcagcaggatcagcttcaggcccttggcg 3496272
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 35 ctctctcgtcttccaacttgcatcac 60 |||||||||||||||||||||||||| Sbjct: 28961613 ctctctcgtcttccaacttgcatcac 28961588
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 35 ctctctcgtcttccaacttgcatcac 60 |||||||||||||||||||||||||| Sbjct: 79150 ctctctcgtcttccaacttgcatcac 79125
>emb|CT010581.10| Mouse DNA sequence from clone RP23-104J14 on chromosome 16, complete sequence Length = 218225 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 tcatgttcacattctctctcg 42 ||||||||||||||||||||| Sbjct: 77794 tcatgttcacattctctctcg 77814
>gb|AC154814.2| Mus musculus BAC clone RP24-532L22 from 16, complete sequence Length = 155332 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 tcatgttcacattctctctcg 42 ||||||||||||||||||||| Sbjct: 95871 tcatgttcacattctctctcg 95891
>emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in linkage group 20, complete sequence Length = 212105 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 222 tcaccaggagcaggagggcaacgca 246 |||||||||||||||| |||||||| Sbjct: 67817 tcaccaggagcaggagagcaacgca 67841
>ref|XM_365485.1| Magnaporthe grisea 70-15 predicted protein (MG02187.4) partial mRNA Length = 2484 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 aacgcgggcagagggaggag 300 |||||||||||||||||||| Sbjct: 370 aacgcgggcagagggaggag 389
>gb|AC079741.5| Homo sapiens BAC clone CTD-2252G20 from 7, complete sequence Length = 36722 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ggcagagggaggagctgttg 306 |||||||||||||||||||| Sbjct: 20039 ggcagagggaggagctgttg 20058
>gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, complete sequence Length = 188333 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ggcagagggaggagctgttg 306 |||||||||||||||||||| Sbjct: 177641 ggcagagggaggagctgttg 177660
>gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-A-951C11, complete sequence Length = 114411 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ttttaaaacgtaaactttgt 22 |||||||||||||||||||| Sbjct: 106415 ttttaaaacgtaaactttgt 106396
>gb|AC159240.3| Mus musculus BAC clone RP24-555M20 from chromosome 5, complete sequence Length = 197104 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ttctcatcagtcaccaggca 90 |||||||||||||||||||| Sbjct: 85481 ttctcatcagtcaccaggca 85500
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gtcaccaggagcaggagggc 240 |||||||||||||||||||| Sbjct: 35586 gtcaccaggagcaggagggc 35567
>emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in linkage group 13, complete sequence Length = 157140 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ttgtcatgttcacattctct 38 |||||||||||||||||||| Sbjct: 63773 ttgtcatgttcacattctct 63792
>emb|CR792423.5| Zebrafish DNA sequence from clone CH211-190H10 in linkage group 5, complete sequence Length = 154548 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ctgccatttttcacatgcta 187 |||||||||||||||||||| Sbjct: 21823 ctgccatttttcacatgcta 21804
>emb|CR388095.8| Zebrafish DNA sequence from clone CH211-199M9 in linkage group 14, complete sequence Length = 208632 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tttcactgcaaggatcaaag 142 |||||||||||||||||||| Sbjct: 42732 tttcactgcaaggatcaaag 42751
>emb|BX005193.17| Zebrafish DNA sequence from clone CH211-146M5, complete sequence Length = 169110 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 aggagggcaacgcagtggcg 252 |||||||||||||||||||| Sbjct: 12778 aggagggcaacgcagtggcg 12759
>gb|AC016597.4|AC016597 Homo sapiens chromosome 16 clone CTD-2049O4, complete sequence Length = 129338 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ttttaaaacgtaaactttgt 22 |||||||||||||||||||| Sbjct: 106030 ttttaaaacgtaaactttgt 106049
>emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in linkage group 13, complete sequence Length = 190607 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 aggagggcaacgcagtggcg 252 |||||||||||||||||||| Sbjct: 4356 aggagggcaacgcagtggcg 4375
>emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chromosome 2, complete sequence Length = 187665 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gttttgtatctgccattttt 178 |||||||||||||||||||| Sbjct: 142920 gttttgtatctgccattttt 142939
>gb|AC145559.4| Mus musculus BAC clone RP23-371A1 from 5, complete sequence Length = 203726 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ttctcatcagtcaccaggca 90 |||||||||||||||||||| Sbjct: 21651 ttctcatcagtcaccaggca 21632
>emb|AL691505.12| Mouse DNA sequence from clone RP23-82B19 on chromosome 10, complete sequence Length = 220450 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gcagagggaggagctgttgt 307 |||||||||||||||||||| Sbjct: 167018 gcagagggaggagctgttgt 167037
>emb|AL772215.8| Mouse DNA sequence from clone RP23-114N20 on chromosome 2, complete sequence Length = 187537 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggttttaaaacgtaaacttt 20 |||||||||||||||||||| Sbjct: 53333 ggttttaaaacgtaaacttt 53352 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,229,497 Number of Sequences: 3902068 Number of extensions: 3229497 Number of successful extensions: 62631 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62502 Number of HSP's gapped (non-prelim): 129 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)