ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl18h06 |
|---|---|
| Clone Library Name | barley_pub |
>RS9_TOBAC (P49214) 40S ribosomal protein S9 (S4) (Fragment)| Length = 77 Score = 67.0 bits (162), Expect = 1e-11 Identities = 31/39 (79%), Positives = 35/39 (89%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKKAS 233 VPSFMVR++S+KHIDFSL SPFGGG GRVKRKNQK A+ Sbjct: 25 VPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKNQKAAA 63
>RS9_DROME (P55935) 40S ribosomal protein S9| Length = 195 Score = 62.8 bits (151), Expect = 2e-10 Identities = 28/37 (75%), Positives = 33/37 (89%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKK 239 +PSF+VR++S+KHIDFSL SPFGGG GRVKRKN KK Sbjct: 145 IPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKK 181
>RS9_RAT (P29314) 40S ribosomal protein S9| Length = 193 Score = 62.0 bits (149), Expect = 3e-10 Identities = 27/37 (72%), Positives = 33/37 (89%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKK 239 +PSF+VR++S+KHIDFSL SP+GGG GRVKRKN KK Sbjct: 143 IPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 179
>RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9| Length = 193 Score = 62.0 bits (149), Expect = 3e-10 Identities = 27/37 (72%), Positives = 33/37 (89%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKK 239 +PSF+VR++S+KHIDFSL SP+GGG GRVKRKN KK Sbjct: 143 IPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 179
>RS9_HUMAN (P46781) 40S ribosomal protein S9| Length = 193 Score = 62.0 bits (149), Expect = 3e-10 Identities = 27/37 (72%), Positives = 33/37 (89%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKK 239 +PSF+VR++S+KHIDFSL SP+GGG GRVKRKN KK Sbjct: 143 IPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 179
>RS9_PODAN (P52810) 40S ribosomal protein S9 (S7)| Length = 190 Score = 60.5 bits (145), Expect = 1e-09 Identities = 27/38 (71%), Positives = 33/38 (86%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKKA 236 VPSF+VR++S+KHIDF+LTSPFGGG GRV+RK K A Sbjct: 141 VPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKKAKAA 178
>RS9_CAEEL (Q20228) 40S ribosomal protein S9| Length = 189 Score = 57.4 bits (137), Expect = 9e-09 Identities = 25/37 (67%), Positives = 32/37 (86%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKK 239 VPSF+VR++S+KHIDFSL SP+GGG GRVKR+ +K Sbjct: 143 VPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRK 179
>RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)| Length = 194 Score = 55.1 bits (131), Expect = 4e-08 Identities = 24/34 (70%), Positives = 29/34 (85%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKN 248 +PSFMVR++SEKHIDF+ TSPFGG GRV R+N Sbjct: 142 IPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 175
>RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)| Length = 196 Score = 55.1 bits (131), Expect = 4e-08 Identities = 24/34 (70%), Positives = 29/34 (85%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKN 248 +PSFMVR++SEKHIDF+ TSPFGG GRV R+N Sbjct: 142 IPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 175
>RS9A_SCHPO (Q09757) 40S ribosomal protein S9-A| Length = 190 Score = 53.1 bits (126), Expect = 2e-07 Identities = 22/33 (66%), Positives = 30/33 (90%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRK 251 VPSF+VR++++KHIDF+L+SP+GGG GR KRK Sbjct: 142 VPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRK 174
>RS9B_SCHPO (O59675) 40S ribosomal protein S9-B| Length = 191 Score = 53.1 bits (126), Expect = 2e-07 Identities = 22/33 (66%), Positives = 30/33 (90%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRK 251 VPSF+VR++++KHIDF+L+SP+GGG GR KRK Sbjct: 142 VPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRK 174
>RS9_TRYBB (P17959) Probable 40S ribosomal protein S9| Length = 190 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/38 (57%), Positives = 26/38 (68%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKKA 236 +PSF+VRV SE HI F+ SPFG G GRVKR + A Sbjct: 142 IPSFIVRVSSEHHIAFADASPFGNGRPGRVKRVKRNAA 179
>RS9_DICDI (P14132) 40S ribosomal protein S9 (40S ribosomal protein 1024)| (Vegetative-specific protein V12) Length = 185 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/39 (56%), Positives = 26/39 (66%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFSLTSPFGGGPAGRVKRKNQKKAS 233 VPSF+VRVES+KH+ + TSP GG GR RK K S Sbjct: 140 VPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNS 178
>RS9_NAEFO (Q25555) 40S ribosomal protein S9| Length = 186 Score = 37.7 bits (86), Expect = 0.007 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%) Frame = -1 Query: 349 VPSFMVRVESEKHIDFS-LTSPFGGGPAGRVKRKNQK 242 VPSF+VRV+SEKHI+ S ++ GG GR+ RK K Sbjct: 145 VPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKLK 181
>TRM2_ARATH (Q9SRU7) Probable N(2),N(2)-dimethylguanosine tRNA| methyltransferase (EC 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 599 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -2 Query: 153 VVSALAERPETFMDYPLVVSLHYLCC*HACTSLCLELFVRDAVI 22 + + L E +D PL +SLH LC C S +F R AVI Sbjct: 404 ISAVLTTVSEELLDVPLFLSLHNLCATLKCISPSAAMF-RSAVI 446
>DOCK1_MOUSE (Q8BUR4) Dedicator of cytokinesis protein 1 (180 kDa protein| downstream of CRK) (DOCK180) (Fragments) Length = 1027 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/43 (25%), Positives = 23/43 (53%) Frame = +3 Query: 42 IAPNITKCMHANNRDNATKRQEDNP*KSQASQLKHSQHQHLIN 170 + P + K MH+ ++D K D K + + ++S+HQ + + Sbjct: 831 LEPLLPKKMHSRSQDKLDKDDPDKEKKDKKKEKRNSKHQEIFD 873
>HDAC_MAIZE (P56521) Probable histone deacetylase (RPD3 homolog)| Length = 513 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +3 Query: 30 HHEQIAPNITKCMHANNRDNATKRQEDNP*KSQASQLKHSQHQH 161 ++E P+ T + +N +N RQ+ + +S+ S+L+H+ H Sbjct: 346 YYEYFGPDYTLHVAPSNMENKNTRQQLDDIRSKLSKLRHAPSVH 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,950,381 Number of Sequences: 219361 Number of extensions: 533795 Number of successful extensions: 1238 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1221 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1238 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
