>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 366 CCQTHCTCDQWSSRCCTIRGIC*QSKC 286
           CC T CTC      CC     C Q  C
Sbjct: 78  CCPTKCTCCPKKCTCCPQPTCCVQPTC 104

>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 375 GASCCQTHC---TCDQWSSRCCTIRGIC*QSKC 286
           G+SCCQ+ C   +C Q  S CC  +  C QS C
Sbjct: 142 GSSCCQSSCCKPSCSQ--SSCC--KPCCSQSSC 170

>PRKDC_CHICK (Q8QGX4) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4134

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 172  Y*SRRLHPM-LWQTMATSPCHVKDKLQNSYIC 264
            Y   ++ PM +W  + T+ C   DKLQ  ++C
Sbjct: 3175 YPDAKMDPMNIWDDIITNRCFFLDKLQEKFLC 3206

>KRA48_HUMAN (Q9BYQ9) Keratin-associated protein 4-8 (Keratin-associated protein|
           4.8) (Ultrahigh sulfur keratin-associated protein 4.8)
           (Fragment)
          Length = 114

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 372 ASCCQTHCTCDQWSSRCCTIRGIC*QSKC 286
           +SCC+  C        CC +R +C +  C
Sbjct: 61  SSCCRPSCCESSCCRPCCCVRPVCGRVSC 89

>CYSPL_LYCES (P20721) Low-temperature-induced cysteine proteinase precursor (EC|
           3.4.22.-) (Fragment)
          Length = 346

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 375 GASCCQTHCTCDQWSSRCCTIR-GIC*QSK 289
           GA+CC+ H +C       C +R G C  SK
Sbjct: 288 GATCCEDHYSCCPHDYPICNVRQGTCSMSK 317

>KRA52_HUMAN (Q701N4) Keratin-associated protein 5-2 (Keratin-associated protein|
           5.2) (Ultrahigh sulfur keratin-associated protein 5.2)
           (Keratin-associated protein 5-8) (Keratin-associated
           protein 5.8)
          Length = 177

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 375 GASCCQTHC---TCDQWSSRCCTIRGIC*QSKCFLKQVSRANVAV 250
           G+SCCQ+ C    C Q  S CC    +C QS C      ++N  V
Sbjct: 129 GSSCCQSSCCKPCCCQ--SSCCV--PVCCQSSCCKPCCCQSNCCV 169

>KRA49_HUMAN (Q9BYQ8) Keratin-associated protein 4-9 (Keratin-associated protein|
           4.9) (Ultrahigh sulfur keratin-associated protein 4.9)
           (Fragment)
          Length = 191

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 372 ASCCQTHCTCDQWSSRCCTIRGIC*QSKC 286
           +SCC+  C        CC +R +C +  C
Sbjct: 138 SSCCRPSCCESSCCRPCCCVRPVCGRVSC 166

>PAND_METCA (Q605G8) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)|
           (Aspartate alpha-decarboxylase) [Contains: Aspartate
           1-decarboxylase beta chain; Aspartate 1-decarboxylase
           alpha chain]
          Length = 126

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 224 GDVAIVCHSIGCNXXXXXXLRPQLVSSED*KQSVIHQH 111
           GD+ I+C  +G N       RP LV  ++  Q     H
Sbjct: 82  GDIVIICAYVGLNQAELAAYRPNLVYVDENNQITRTSH 119

>R1AB_IBVBC (Q91QT2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-
          Length = 6629

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 154  SCGLRVY*SRRLHPMLWQTMATSPCHVKDKLQNSYICSAN 273
            +CG++ Y  R L   +    AT+  H K +  N   C AN
Sbjct: 1354 NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGAN 1393

>R1AB_IBVB (P27920) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-P
          Length = 6629

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 154  SCGLRVY*SRRLHPMLWQTMATSPCHVKDKLQNSYICSAN 273
            +CG++ Y  R L   +    AT+  H K +  N   C AN
Sbjct: 1354 NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGAN 1393

>VE6_HPV61 (Q80948) Protein E6|
          Length = 146

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 354 HCTCDQWSSRCCTIRGIC 301
           H    QW+ RCC  RG C
Sbjct: 123 HYIAGQWTGRCCQCRGPC 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,784,185
Number of Sequences: 219361
Number of extensions: 992750
Number of successful extensions: 2501
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2493
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)