ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154144.9| Mus musculus chromosome 1, clone RP24-289K8, comp... 42 1.3
2emb|AL672034.5| Mouse DNA sequence from clone RP23-461P10 on chr... 42 1.3
3emb|AL672055.8| Mouse DNA sequence from clone RP23-339K2 on chro... 42 1.3
4gb|AC009357.8| Drosophila melanogaster clone BACR18I07, complete... 40 5.1
5gb|AC008224.19| Drosophila melanogaster clone BACR29J02, complet... 40 5.1
6ref|XM_538305.2| PREDICTED: Canis familiaris similar to carnitin... 40 5.1
7ref|XM_850877.1| PREDICTED: Canis familiaris similar to carnitin... 40 5.1
8ref|XM_850837.1| PREDICTED: Canis familiaris similar to carnitin... 40 5.1
9ref|XM_850793.1| PREDICTED: Canis familiaris similar to carnitin... 40 5.1
10emb|X91396.2|HTDNALZF1 Helobdella triserialis partial Lzf1 gene ... 40 5.1
11emb|AL607076.9| Human DNA sequence from clone RP11-321J5 on chro... 40 5.1
12emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in l... 40 5.1
13gb|AC090309.4| Homo sapiens chromosome 11, clone RP11-142C4, com... 40 5.1
14gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, comple... 40 5.1
15gb|AC097518.2| Homo sapiens BAC clone RP11-487E13 from 4, comple... 40 5.1
16gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromo... 40 5.1
17emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 i... 40 5.1
18gb|AC073167.12| Homo sapiens chromosome 15, clone RP11-317G6, co... 40 5.1
19gb|AE003601.4| Drosophila melanogaster chromosome 3R, section 7 ... 40 5.1
20dbj|AP001636.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.1
21emb|AJ620356.1| Oncorhynchus mykiss partial mRNA for carnitine p... 40 5.1
22gb|AC118274.9| Homo sapiens chromosome 15, clone RP11-265M18, co... 40 5.1

>gb|AC154144.9| Mus musculus chromosome 1, clone RP24-289K8, complete sequence
          Length = 158556

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   tctgctaacttgtttcaaaaa 285
             |||||||||||||||||||||
Sbjct: 92025 tctgctaacttgtttcaaaaa 92005



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>emb|AL672034.5| Mouse DNA sequence from clone RP23-461P10 on chromosome X, complete
             sequence
          Length = 199101

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 239   acaaattacaaaacagctaca 259
             |||||||||||||||||||||
Sbjct: 89387 acaaattacaaaacagctaca 89407



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>emb|AL672055.8| Mouse DNA sequence from clone RP23-339K2 on chromosome X, complete
              sequence
          Length = 232188

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 231    tgtcaaagacaaattacaaaa 251
              |||||||||||||||||||||
Sbjct: 116718 tgtcaaagacaaattacaaaa 116698



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>gb|AC009357.8| Drosophila melanogaster clone BACR18I07, complete sequence
          Length = 179374

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    ttacaaaaatgttgatgtat 122
              ||||||||||||||||||||
Sbjct: 135625 ttacaaaaatgttgatgtat 135606



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>gb|AC008224.19| Drosophila melanogaster clone BACR29J02, complete sequence
          Length = 181633

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    ttacaaaaatgttgatgtat 122
              ||||||||||||||||||||
Sbjct: 156023 ttacaaaaatgttgatgtat 156042



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>ref|XM_538305.2| PREDICTED: Canis familiaris similar to carnitine palmitoyltransferase
            1B isoform a, transcript variant 1 (LOC481184), mRNA
          Length = 2629

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  ctgtggcagacgatggctac 218
            ||||||||||||||||||||
Sbjct: 2195 ctgtggcagacgatggctac 2214



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>ref|XM_850877.1| PREDICTED: Canis familiaris similar to carnitine palmitoyltransferase
            1B isoform a, transcript variant 6 (LOC481184), mRNA
          Length = 2629

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  ctgtggcagacgatggctac 218
            ||||||||||||||||||||
Sbjct: 2195 ctgtggcagacgatggctac 2214



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>ref|XM_850837.1| PREDICTED: Canis familiaris similar to carnitine palmitoyltransferase
            1B isoform a, transcript variant 5 (LOC481184), mRNA
          Length = 2596

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  ctgtggcagacgatggctac 218
            ||||||||||||||||||||
Sbjct: 2162 ctgtggcagacgatggctac 2181



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>ref|XM_850793.1| PREDICTED: Canis familiaris similar to carnitine palmitoyltransferase
            1B isoform a, transcript variant 4 (LOC481184), mRNA
          Length = 2644

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  ctgtggcagacgatggctac 218
            ||||||||||||||||||||
Sbjct: 2210 ctgtggcagacgatggctac 2229



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>emb|X91396.2|HTDNALZF1 Helobdella triserialis partial Lzf1 gene for leech zinc finger 1
           protein
          Length = 2045

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 cttgtttcaaaaaacatttg 292
           ||||||||||||||||||||
Sbjct: 741 cttgtttcaaaaaacatttg 760



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>emb|AL607076.9| Human DNA sequence from clone RP11-321J5 on chromosome 10, complete
             sequence
          Length = 61344

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   catgtcatgtcaaagacaaa 243
             ||||||||||||||||||||
Sbjct: 39082 catgtcatgtcaaagacaaa 39101



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>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains
             the gene for a novel protein (zgc:63880), the 3' end of
             the gene for a novel protein similar to vertebrate KCND2,
             the 5' end of the ing3 gene for inhibitor of growth family
             member 3 and a CpG island, complete sequence
          Length = 200582

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 239   acaaattacaaaacagctacattt 262
             ||||||||||||||||| ||||||
Sbjct: 18746 acaaattacaaaacagcaacattt 18723



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>gb|AC090309.4| Homo sapiens chromosome 11, clone RP11-142C4, complete sequence
          Length = 161586

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   tttgctctgctaacttgttt 279
             ||||||||||||||||||||
Sbjct: 77488 tttgctctgctaacttgttt 77469



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>gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, complete sequence
          Length = 59463

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   atgttgatgtataacagattgctt 134
             ||||||||||||||||| ||||||
Sbjct: 50879 atgttgatgtataacagtttgctt 50902



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>gb|AC097518.2| Homo sapiens BAC clone RP11-487E13 from 4, complete sequence
          Length = 189323

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tacatcctatgctgtggcag 207
              ||||||||||||||||||||
Sbjct: 140229 tacatcctatgctgtggcag 140210



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>gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromosome 7, complete
             sequence
          Length = 162801

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   tgctctgctaacttgtttcaaaaa 285
             ||||||||||||||||| ||||||
Sbjct: 73346 tgctctgctaacttgttgcaaaaa 73323



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>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15,
             complete sequence
          Length = 205794

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    cacatcatcacataatcacg 62
             ||||||||||||||||||||
Sbjct: 33019 cacatcatcacataatcacg 33038



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>gb|AC073167.12| Homo sapiens chromosome 15, clone RP11-317G6, complete sequence
          Length = 174654

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   atgtcaaagacaaattacaaaaca 253
             |||||||||| |||||||||||||
Sbjct: 29629 atgtcaaagataaattacaaaaca 29606



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>gb|AE003601.4| Drosophila melanogaster chromosome 3R, section 7 of 118 of the complete
              sequence
          Length = 305165

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    ttacaaaaatgttgatgtat 122
              ||||||||||||||||||||
Sbjct: 278426 ttacaaaaatgttgatgtat 278407



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>dbj|AP001636.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-142C4, complete
             sequence
          Length = 161582

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   tttgctctgctaacttgttt 279
             ||||||||||||||||||||
Sbjct: 77486 tttgctctgctaacttgttt 77467



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>emb|AJ620356.1| Oncorhynchus mykiss partial mRNA for carnitine palmitoyltransferase I
            (cpt1 gene), isoform D
          Length = 2724

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  ctgtggcagacgatggctac 218
            ||||||||||||||||||||
Sbjct: 1082 ctgtggcagacgatggctac 1101



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>gb|AC118274.9| Homo sapiens chromosome 15, clone RP11-265M18, complete sequence
          Length = 177432

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    atgtcaaagacaaattacaaaaca 253
              |||||||||| |||||||||||||
Sbjct: 175231 atgtcaaagataaattacaaaaca 175208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,680,480
Number of Sequences: 3902068
Number of extensions: 3680480
Number of successful extensions: 72439
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72406
Number of HSP's gapped (non-prelim): 33
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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