ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHG07_HUMAN (Q96QB1) Rho-GTPase-activating protein 7 (Rho-type G... 30 2.1
2SLAF6_HUMAN (Q96DU3) SLAM family member 6 precursor (NK-T-B-anti... 28 8.0

>RHG07_HUMAN (Q96QB1) Rho-GTPase-activating protein 7 (Rho-type GTPase-activating|
            protein 7) (Deleted in liver cancer 1 protein) (Dlc-1)
            (HP protein) (StAR-related lipid transfer protein 12)
            (StARD12) (START domain-containing protein 12)
          Length = 1091

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
 Frame = +2

Query: 29   YLLTPCGDSFNKSSVRYKISAKTH----------HLCSVKPLKRRELYTQNDMPTSGTR 175
            YL+ PCG   +K +   ++  + H          HLC+ + +K R+ ++  +  T  T+
Sbjct: 1031 YLIEPCGPGKSKLTYMCRVDLRGHMPEWYTKSFGHLCAAEVVKIRDSFSNQNTETKDTK 1089



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>SLAF6_HUMAN (Q96DU3) SLAM family member 6 precursor (NK-T-B-antigen) (NTB-A)|
           (Activating NK receptor)
          Length = 331

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 125 KRRELYTQNDMPTSGTRINQXXXXXXXDYVCVSPTNPTINECLTHS 262
           KRR+  + +   T G            +YV VSPTN T+   +THS
Sbjct: 250 KRRDSLSLSTQRTQGPE-----SARNLEYVSVSPTNNTVYASVTHS 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,212,857
Number of Sequences: 219361
Number of extensions: 446636
Number of successful extensions: 665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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