ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_123304.3| Arabidopsis thaliana CDC2CAT; ATP binding / kin... 40 3.5
2ref|XM_473088.1| Oryza sativa (japonica cultivar-group), predic... 40 3.5
3emb|AL591852.10| Human DNA sequence from clone RP11-249H20 on ch... 40 3.5
4gb|DQ436495.1| Homo sapiens death-associated protein kinase 1 (D... 40 3.5
5emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4,... 40 3.5
6gb|AC104117.2| Homo sapiens chromosome 5 clone RP11-281O15, comp... 40 3.5
7gb|AF120153.1|AF120153 Arabidopsis thaliana cyclin-dependent kin... 40 3.5
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
9gb|BT004267.1| Arabidopsis thaliana clone RAFL15-28-M08 (R50084)... 40 3.5
10dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 3.5
11dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.5
12gb|U83118.1|ATU83118 Arabidopsis thaliana cdc2-like protein gene... 40 3.5
13dbj|AK099205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.5
14dbj|AK060812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.5
15emb|CR933139.1| Uncultured bacterium partial 16S rRNA gene from ... 40 3.5
16emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.5

>ref|NM_123304.3| Arabidopsis thaliana CDC2CAT; ATP binding / kinase/ protein kinase/
            protein serine/threonine kinase/ protein-tyrosine kinase
            AT5G39420 (CDC2CAT) mRNA, complete cds
          Length = 2329

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   aatctcagcaaaaacacatc 101
            ||||||||||||||||||||
Sbjct: 1049 aatctcagcaaaaacacatc 1030



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>ref|XM_473088.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2247

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   actctttcaacaagagtagc 70
            ||||||||||||||||||||
Sbjct: 1277 actctttcaacaagagtagc 1258



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>emb|AL591852.10| Human DNA sequence from clone RP11-249H20 on chromosome 9 Contains part
             of the DAPK1 gene for death-assodeath-associated protein
             kinase 1, complete sequence
          Length = 72904

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   tctcactcactcaaagtctc 269
             ||||||||||||||||||||
Sbjct: 61707 tctcactcactcaaagtctc 61726



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>gb|DQ436495.1| Homo sapiens death-associated protein kinase 1 (DAPK1) gene, complete cds
          Length = 212999

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    tctcactcactcaaagtctc 269
              ||||||||||||||||||||
Sbjct: 134513 tctcactcactcaaagtctc 134532



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>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07,
             complete sequence
          Length = 130779

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    actctttcaacaagagtagc 70
             ||||||||||||||||||||
Sbjct: 69087 actctttcaacaagagtagc 69068



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>gb|AC104117.2| Homo sapiens chromosome 5 clone RP11-281O15, complete sequence
          Length = 211975

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    aaaaacacatcatctatgta 110
             ||||||||||||||||||||
Sbjct: 73982 aaaaacacatcatctatgta 73963



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>gb|AF120153.1|AF120153 Arabidopsis thaliana cyclin-dependent kinase CDC2C (CDC2CAt) mRNA,
            complete cds
          Length = 2367

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   aatctcagcaaaaacacatc 101
            ||||||||||||||||||||
Sbjct: 1066 aatctcagcaaaaacacatc 1047



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 51       actctttcaacaagagtagc 70
                ||||||||||||||||||||
Sbjct: 25187420 actctttcaacaagagtagc 25187401



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>gb|BT004267.1| Arabidopsis thaliana clone RAFL15-28-M08 (R50084) At5g39420 mRNA,
            complete sequence
          Length = 2347

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   aatctcagcaaaaacacatc 101
            ||||||||||||||||||||
Sbjct: 1049 aatctcagcaaaaacacatc 1030



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 42      cctgcggtgactctttcaac 61
               ||||||||||||||||||||
Sbjct: 2219749 cctgcggtgactctttcaac 2219730



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>dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUL8
          Length = 83450

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    aatctcagcaaaaacacatc 101
             ||||||||||||||||||||
Sbjct: 28939 aatctcagcaaaaacacatc 28920



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>gb|U83118.1|ATU83118 Arabidopsis thaliana cdc2-like protein gene, complete cds
          Length = 2960

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   aatctcagcaaaaacacatc 101
            ||||||||||||||||||||
Sbjct: 1249 aatctcagcaaaaacacatc 1230



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>dbj|AK099205.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022C17, full
            insert sequence
          Length = 2670

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   actctttcaacaagagtagc 70
            ||||||||||||||||||||
Sbjct: 1209 actctttcaacaagagtagc 1228



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>dbj|AK060812.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H03, full
            insert sequence
          Length = 2780

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   actctttcaacaagagtagc 70
            ||||||||||||||||||||
Sbjct: 1554 actctttcaacaagagtagc 1535



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>emb|CR933139.1| Uncultured bacterium partial 16S rRNA gene from clone 012E05_B_SD_P15
          Length = 1358

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   cctcctcacaccctgcggtg 50
            ||||||||||||||||||||
Sbjct: 1132 cctcctcacaccctgcggtg 1113



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>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14,
              complete sequence
          Length = 150187

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     actctttcaacaagagtagc 70
              ||||||||||||||||||||
Sbjct: 134847 actctttcaacaagagtagc 134828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,234,410
Number of Sequences: 3902068
Number of extensions: 3234410
Number of successful extensions: 50610
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50578
Number of HSP's gapped (non-prelim): 32
length of query: 272
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 250
effective length of database: 17,147,199,772
effective search space: 4286799943000
effective search space used: 4286799943000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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