ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1356_MYCBO (P64806) Hypothetical protein Mb1356 31 0.71
2Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1 31 0.71
3MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structura... 28 4.6

>Y1356_MYCBO (P64806) Hypothetical protein Mb1356|
          Length = 98

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 287 PAASVDERRQWHAQSWFRYESFGPRAK 207
           P A VD+RR WH   W    + GP  K
Sbjct: 70  PQAGVDDRRHWHTPCWANRATRGPTRK 96



to top

>Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1|
          Length = 98

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 287 PAASVDERRQWHAQSWFRYESFGPRAK 207
           P A VD+RR WH   W    + GP  K
Sbjct: 70  PQAGVDDRRHWHTPCWANRATRGPTRK 96



to top

>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1499

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 253  MRSHGLDMKVLDPERNSVESLYENLVRKRDYIY 155
            +R HG+ +  L+P  N+++S  EN  R +D +Y
Sbjct: 942  IRQHGMTLSQLEPIANTLQSDPENYERLKDDLY 974


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,709,644
Number of Sequences: 219361
Number of extensions: 643236
Number of successful extensions: 1725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top