>VD05_VARV (P33069) Protein D5|
          Length = 785

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +3

Query: 159 NLEENNNKIASCAKLDYYYYCSTLEQLYS*VQ*T*HLHPHQYLVEDDAV*SVSRISYDHS 338
           +L+ENN        +DY   C+  ++         H HPHQ  +E+DA+  + +    HS
Sbjct: 263 DLDENNFTTVPLV-IDYVTPCALCKKRS-------HKHPHQLSLENDAI-RIYKTGNPHS 313

Query: 339 C----IPVCGHEV 365
           C    +P+ G+++
Sbjct: 314 CKVKIVPLDGNKL 326

>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
           [Includes: ATP-dependent asparagine adenylase (AsnA)
           (Asparagine activase); ATP-dependent glutamine adenylase
           (GlnA) (Glutamine activase); ATP-dependent tyrosine
           adenylase (TyrA) (Ty
          Length = 6486

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -2

Query: 375 AFLPLHGHTPE----YKSDHMKCVKHFTQRHLRPNTDADGGVMFIALRS 241
           A+LP+    P+    Y  D  +     TQ HL+PN    G V+++  RS
Sbjct: 540 AYLPIDPEYPQDRIQYLLDDSQTTLLLTQSHLQPNIRFAGSVLYLDDRS 588

>TRA_STRLI (P22409) Protein tra|
          Length = 621

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 4   GHTSLKVALSNSIITND*ILVQDVFPSIWEKRRDEKDCVGS 126
           G   + VA+++ +   +  LV+ + PS W +  DE+  VG+
Sbjct: 147 GRRKVAVAVADELSAEERRLVERLDPSYWAQHADERGLVGT 187

>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)|
           (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus
           and actin connecting element protein) (NUANCE protein)
          Length = 6885

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 112 DCVGSDASQE*QRIQEIWKKITTKSLPALN 201
           D VGS  S+E +R+ + W+K+ +K+   +N
Sbjct: 641 DVVGSSISKELRRLNKRWRKLVSKTQLEMN 670


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,216,955
Number of Sequences: 219361
Number of extensions: 958823
Number of successful extensions: 1989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1989
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)