>gb|AY359936.1| Trachelomonas grandis large subunit ribosomal RNA gene, partial
           sequence
          Length = 1448

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 232 agcaactctactcctgagtgc 252
           |||||||||||||||||||||
Sbjct: 306 agcaactctactcctgagtgc 286

>gb|AC102611.10| Mus musculus chromosome 1, clone RP23-416O18, complete sequence
          Length = 210808

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 304    tgtgaagtgtttcacgcattt 324
              |||||||||||||||||||||
Sbjct: 139769 tgtgaagtgtttcacgcattt 139749

>gb|AC004848.1| Homo sapiens PAC clone RP4-649P17 from 7, complete sequence
          Length = 135214

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 249   gtgcaataaacataacacctccatc 273
             ||||||||||||||||| |||||||
Sbjct: 64724 gtgcaataaacataacatctccatc 64700

>gb|AC158961.3| Mus musculus chromosome 1, clone RP23-316E20, complete sequence
          Length = 202205

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 304    tgtgaagtgtttcacgcattt 324
              |||||||||||||||||||||
Sbjct: 174586 tgtgaagtgtttcacgcattt 174606

>gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosome 10, complete sequence
          Length = 174545

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    ggattgtgtcggttcagatg 130
              ||||||||||||||||||||
Sbjct: 165780 ggattgtgtcggttcagatg 165761

>gb|AC142345.1| Pan troglodytes BAC clone RP43-1K4 from Y, complete sequence
          Length = 213921

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 151   atacaagaaatctggaagaaaata 174
             |||||| |||||||||||||||||
Sbjct: 71634 atacaaaaaatctggaagaaaata 71657

>emb|CT025553.4| Mouse DNA sequence from clone RP23-470O20 on chromosome 14, complete
             sequence
          Length = 173093

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   gaagaaaataacaacaaaat 184
             ||||||||||||||||||||
Sbjct: 52691 gaagaaaataacaacaaaat 52710

>gb|AC135780.2| Homo sapiens chromosome 16 clone CTD-2320F3, complete sequence
          Length = 125603

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   ggaagaaaataacaacaaaa 183
             ||||||||||||||||||||
Sbjct: 33769 ggaagaaaataacaacaaaa 33788

>gb|AC119412.16| Medicago truncatula clone mth2-31d18, complete sequence
          Length = 120757

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    tggcattgagcaacagtattatca 46
             |||||||||| |||||||||||||
Sbjct: 12467 tggcattgagaaacagtattatca 12444

>gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete sequence
          Length = 121763

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     tggcattgagcaacagtattatca 46
              |||||||||| |||||||||||||
Sbjct: 111946 tggcattgagaaacagtattatca 111923

>gb|AC098690.3| Homo sapiens chromosome 1 clone RP11-507I14, complete sequence
          Length = 128000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 aaatctggaagaaaataaca 177
           ||||||||||||||||||||
Sbjct: 863 aaatctggaagaaaataaca 882

>emb|AL355475.7| Human DNA sequence from clone RP1-241M7 on chromosome 1q43-44, complete
             sequence
          Length = 84707

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   ctactcctgagtgcaataaa 258
             ||||||||||||||||||||
Sbjct: 32634 ctactcctgagtgcaataaa 32653

>gb|AC093563.3| Homo sapiens chromosome 1 clone RP4-648I13, complete sequence
          Length = 163579

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   aaatctggaagaaaataaca 177
             ||||||||||||||||||||
Sbjct: 54016 aaatctggaagaaaataaca 54035

>dbj|BS000600.1| Pan troglodytes chromosome Y clone:PTB-253H05, complete sequences
          Length = 100704

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 151   atacaagaaatctggaagaaaata 174
             |||||| |||||||||||||||||
Sbjct: 25108 atacaaaaaatctggaagaaaata 25085

>emb|BX537340.15| Zebrafish DNA sequence from clone DKEYP-93A2 in linkage group 7, complete
              sequence
          Length = 192070

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    gaaatctggaagaaaataac 176
              ||||||||||||||||||||
Sbjct: 167649 gaaatctggaagaaaataac 167668

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 151      atacaagaaatctggaagaaaata 174
                |||||| |||||||||||||||||
Sbjct: 15327658 atacaaaaaatctggaagaaaata 15327681

>gb|AC146513.4| Pan troglodytes BAC clone CH251-223P3 from chromosome y, complete
             sequence
          Length = 162679

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 151   atacaagaaatctggaagaaaata 174
             |||||| |||||||||||||||||
Sbjct: 12403 atacaaaaaatctggaagaaaata 12380

>gb|AC019187.3|AC019187 Homo sapiens BAC clone RP11-304J20 from 1, complete sequence
          Length = 174673

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aaatctggaagaaaataaca 177
             ||||||||||||||||||||
Sbjct: 90909 aaatctggaagaaaataaca 90890

>gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, complete sequence
          Length = 156100

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ggaagaaaataacaacaaaa 183
             ||||||||||||||||||||
Sbjct: 77872 ggaagaaaataacaacaaaa 77853

>gb|AC009240.6|AC009240 Homo sapiens BAC clone RP11-489O13 from Y, complete sequence
          Length = 101290

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 151   atacaagaaatctggaagaaaata 174
             |||||| |||||||||||||||||
Sbjct: 98518 atacaaaaaatctggaagaaaata 98495

>dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLM24
          Length = 87487

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   aagaaaataacaacaaaatc 185
             ||||||||||||||||||||
Sbjct: 39022 aagaaaataacaacaaaatc 39003

>gb|BC091945.1| Danio rerio cDNA clone IMAGE:7148721
          Length = 1590

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 157 gaaatctggaagaaaataac 176
           ||||||||||||||||||||
Sbjct: 470 gaaatctggaagaaaataac 489

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 31      agcaacagtattatcaccaa 50
               ||||||||||||||||||||
Sbjct: 1986887 agcaacagtattatcaccaa 1986906

>gb|AC153883.6| Mus musculus 10 BAC RP23-368G20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 181524

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    ggattgtgtcggttcagatg 130
              ||||||||||||||||||||
Sbjct: 154373 ggattgtgtcggttcagatg 154392

>emb|AL138996.4|CNS01DX1 Human chromosome 14 DNA sequence BAC R-902B17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184260

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   ggtgtgtggccatgaagtgg 366
             ||||||||||||||||||||
Sbjct: 29648 ggtgtgtggccatgaagtgg 29667

>gb|AC153533.4| Mus musculus 10 BAC RP23-474K10 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 187069

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ggattgtgtcggttcagatg 130
             ||||||||||||||||||||
Sbjct: 77082 ggattgtgtcggttcagatg 77101

>emb|CT010467.6| Mouse DNA sequence from clone RP23-81C12 on chromosome 17, complete
             sequence
          Length = 216559

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   ggaagaaaataacaacaaaa 183
             ||||||||||||||||||||
Sbjct: 79397 ggaagaaaataacaacaaaa 79416

>emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chromosome X, complete
              sequence
          Length = 173254

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    aagaaaataacaacaaaatc 185
              ||||||||||||||||||||
Sbjct: 163924 aagaaaataacaacaaaatc 163943


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,554,801
Number of Sequences: 3902068
Number of extensions: 3554801
Number of successful extensions: 66196
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66120
Number of HSP's gapped (non-prelim): 76
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)