>PRKDC_CHICK (Q8QGX4) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4134

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 178  Y*SRRLHPM-LWQTMATSPCHVKDKLQNSYIC 270
            Y   ++ PM +W  + T+ C   DKLQ  ++C
Sbjct: 3175 YPDAKMDPMNIWDDIITNRCFFLDKLQEKFLC 3206

>R1AB_IBVBC (Q91QT2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-
          Length = 6629

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 160  SCGLRVY*SRRLHPMLWQTMATSPCHVKDKLQNSYICSAN 279
            +CG++ Y  R L   +    AT+  H K +  N   C AN
Sbjct: 1354 NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGAN 1393

>R1AB_IBVB (P27920) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-P
          Length = 6629

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 160  SCGLRVY*SRRLHPMLWQTMATSPCHVKDKLQNSYICSAN 279
            +CG++ Y  R L   +    AT+  H K +  N   C AN
Sbjct: 1354 NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGAN 1393

>SAHH_BRAJA (Q89HP6) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 473

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 148 SDETSCGL-RVY*SRRLHPMLWQTMATSPCHVKDKLQNSYICSANLL 285
           S+ET+ G+ R+Y  ++   +LW  +  +    K K  N Y C  +L+
Sbjct: 195 SEETTTGVHRLYDMQKAGTLLWPAINVNDSVTKSKFDNLYGCRESLV 241

>PAND_METCA (Q605G8) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)|
           (Aspartate alpha-decarboxylase) [Contains: Aspartate
           1-decarboxylase beta chain; Aspartate 1-decarboxylase
           alpha chain]
          Length = 126

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 230 GDVAIVCHSIGCNXXXXXXLRPQLVSSED*KQSVIHQH 117
           GD+ I+C  +G N       RP LV  ++  Q     H
Sbjct: 82  GDIVIICAYVGLNQAELAAYRPNLVYVDENNQITRTSH 119

>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 372 CLPTHCTCDQWSSRCCTIRGIC*QSKC 292
           C PT CTC      CC     C Q  C
Sbjct: 78  CCPTKCTCCPKKCTCCPQPTCCVQPTC 104

>VE6_HPV61 (Q80948) Protein E6|
          Length = 146

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 360 HCTCDQWSSRCCTIRGIC 307
           H    QW+ RCC  RG C
Sbjct: 123 HYIAGQWTGRCCQCRGPC 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,133,706
Number of Sequences: 219361
Number of extensions: 1029559
Number of successful extensions: 2271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2270
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)