ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete seq... 42 1.3
2emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chr... 42 1.3
3gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome... 40 5.0
4gb|AC073094.11| Homo sapiens BAC clone RP11-369D24 from 7, compl... 40 5.0
5gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete se... 40 5.0
6emb|BX324166.8| Zebrafish DNA sequence from clone DKEY-66A8 in l... 40 5.0
7gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete s... 40 5.0
8gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome... 40 5.0
9dbj|AK048614.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.0
10emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-8... 40 5.0
11gb|AF212491.1| Gibberella zeae strain NRRL 28721 phosphate perme... 40 5.0
12gb|AF212490.1| Gibberella zeae strain NRRL 28720 phosphate perme... 40 5.0
13gb|AF212487.1| Gibberella zeae strain NRRL 6101 phosphate permea... 40 5.0
14emb|AL935178.12| Zebrafish DNA sequence from clone CH211-180B9 i... 40 5.0
15emb|CT009733.13| Mouse DNA sequence from clone RP23-157D19 on ch... 40 5.0

>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence
          Length = 117931

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 111   ttttcctttgcttattgttaagaga 135
             ||||||||||||||||||| |||||
Sbjct: 69981 ttttcctttgcttattgttgagaga 70005



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>emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chromosome X, complete
             sequence
          Length = 206856

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   cttttcctttgcttattgtta 130
             |||||||||||||||||||||
Sbjct: 47723 cttttcctttgcttattgtta 47703



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>gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome 13, complete sequence
          Length = 178609

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   tacaaagccatatatacaaa 312
             ||||||||||||||||||||
Sbjct: 14017 tacaaagccatatatacaaa 14036



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>gb|AC073094.11| Homo sapiens BAC clone RP11-369D24 from 7, complete sequence
          Length = 189126

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     tcggccggcaccctggcagg 105
              ||||||||||||||||||||
Sbjct: 131423 tcggccggcaccctggcagg 131442



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>gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete sequence
          Length = 125467

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ttttcctttgcttattgtta 130
             ||||||||||||||||||||
Sbjct: 80775 ttttcctttgcttattgtta 80794



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>emb|BX324166.8| Zebrafish DNA sequence from clone DKEY-66A8 in linkage group 6, complete
              sequence
          Length = 215450

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    ttttcctttgcttattgtta 130
              ||||||||||||||||||||
Sbjct: 162735 ttttcctttgcttattgtta 162716



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>gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete sequence
          Length = 139728

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ttttcctttgcttattgtta 130
             ||||||||||||||||||||
Sbjct: 58881 ttttcctttgcttattgtta 58862



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>gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome 13, complete sequence
          Length = 204262

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    ctcaaagagctcaagatttt 155
              ||||||||||||||||||||
Sbjct: 163526 ctcaaagagctcaagatttt 163507



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>dbj|AK048614.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130087L13 product:unclassifiable, full
            insert sequence
          Length = 2682

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  ctcaaagagctcaagatttt 155
            ||||||||||||||||||||
Sbjct: 1629 ctcaaagagctcaagatttt 1648



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>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201794

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    cttttcctttgcttattgtt 129
              ||||||||||||||||||||
Sbjct: 142657 cttttcctttgcttattgtt 142638



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>gb|AF212491.1| Gibberella zeae strain NRRL 28721 phosphate permease gene, partial
           cds
          Length = 552

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 atctatctaactgacttcac 231
           ||||||||||||||||||||
Sbjct: 377 atctatctaactgacttcac 396



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>gb|AF212490.1| Gibberella zeae strain NRRL 28720 phosphate permease gene, partial
           cds
          Length = 552

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 atctatctaactgacttcac 231
           ||||||||||||||||||||
Sbjct: 377 atctatctaactgacttcac 396



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>gb|AF212487.1| Gibberella zeae strain NRRL 6101 phosphate permease gene, partial
           cds
          Length = 552

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 atctatctaactgacttcac 231
           ||||||||||||||||||||
Sbjct: 377 atctatctaactgacttcac 396



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>emb|AL935178.12| Zebrafish DNA sequence from clone CH211-180B9 in linkage group 22,
             complete sequence
          Length = 144027

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   tacaaagccatatatacaaa 312
             ||||||||||||||||||||
Sbjct: 28723 tacaaagccatatatacaaa 28704



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>emb|CT009733.13| Mouse DNA sequence from clone RP23-157D19 on chromosome 13, complete
             sequence
          Length = 192464

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   ctcaaagagctcaagatttt 155
             ||||||||||||||||||||
Sbjct: 59962 ctcaaagagctcaagatttt 59943


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,567,309
Number of Sequences: 3902068
Number of extensions: 2567309
Number of successful extensions: 48986
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48953
Number of HSP's gapped (non-prelim): 33
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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