ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl18e09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL353582.16| Human DNA sequence from clone CTD-2190D5 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 115551 Score = 48.1 bits (24), Expect = 0.003 Identities = 24/24 (100%) Strand = Plus / Plus Query: 16 tcaaaactcaactgtatttctata 39 |||||||||||||||||||||||| Sbjct: 81214 tcaaaactcaactgtatttctata 81237
>emb|AL138751.18| Human DNA sequence from clone RP11-346E17 on chromosome 9 Contains the 5' end of a novel gene (CGI-67), a novel gene, a novel gene (LOC138240) and a CpG island, complete sequence Length = 195844 Score = 48.1 bits (24), Expect = 0.003 Identities = 24/24 (100%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctatac 40 |||||||||||||||||||||||| Sbjct: 99133 caaaactcaactgtatttctatac 99110
>gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, complete sequence Length = 209754 Score = 48.1 bits (24), Expect = 0.003 Identities = 24/24 (100%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctatac 40 |||||||||||||||||||||||| Sbjct: 72435 caaaactcaactgtatttctatac 72412
>gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, complete sequence Length = 199004 Score = 48.1 bits (24), Expect = 0.003 Identities = 24/24 (100%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 |||||||||||||||||||||||| Sbjct: 126557 caaaactcaactgtatttctatac 126580
>emb|AL358434.16| Human DNA sequence from clone RP11-471P6 on chromosome 1 Contains the 5' end of the XPR1 gene for xenotropic and polytropic retrovirus receptor, complete sequence Length = 178375 Score = 46.1 bits (23), Expect = 0.012 Identities = 23/23 (100%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 ||||||||||||||||||||||| Sbjct: 153626 caaaactcaactgtatttctata 153604
>gb|AC114788.4| Homo sapiens BAC clone RP11-648F7 from 2, complete sequence Length = 116951 Score = 42.1 bits (21), Expect = 0.19 Identities = 24/25 (96%) Strand = Plus / Minus Query: 16 tcaaaactcaactgtatttctatac 40 ||||||||||| ||||||||||||| Sbjct: 35876 tcaaaactcaattgtatttctatac 35852
>gb|AC009226.3| Homo sapiens BAC clone RP11-167C7 from 2, complete sequence Length = 138778 Score = 42.1 bits (21), Expect = 0.19 Identities = 24/25 (96%) Strand = Plus / Plus Query: 16 tcaaaactcaactgtatttctatac 40 |||||| |||||||||||||||||| Sbjct: 14323 tcaaaaatcaactgtatttctatac 14347
>gb|AF461899.1| Homo sapiens FP6628 mRNA, complete cds Length = 3102 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 1838 caaaaatcaactgtatttctatac 1861
>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence Length = 135248 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 atttctatactgtaaaactatatc 54 ||||||||| |||||||||||||| Sbjct: 57869 atttctataatgtaaaactatatc 57892
>emb|AL359914.14| Human DNA sequence from clone RP11-637B23 on chromosome X Contains a H3 histone, family 3B (H3F3B) pseudogene, the BMP15 gene for bone morphogenetic protein 15, and a high-mobility group box 1 (HMGB1) pseudogene, complete sequence Length = 125495 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||||||||||| |||||||||| Sbjct: 74522 caaaactcaactgaatttctatac 74545
>emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chromosome 13 Contains two CpG islands, complete sequence Length = 123887 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 tcaaaactcaactgtatttctata 39 |||||| ||||||||||||||||| Sbjct: 50834 tcaaaagtcaactgtatttctata 50811
>emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chromosome 9 Contains a novel gene, the 5' end of the CHAC gene for chorea acanthocytosis and a CpG island, complete sequence Length = 110633 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctatac 40 |||||||||| ||||||||||||| Sbjct: 109107 caaaactcaattgtatttctatac 109084
>emb|AL096677.21|HSJ322G13 Human DNA sequence from clone RP3-322G13 on chromosome 20p11.21-12.3 Contains the gene for NTF2-related export protein (NXT1), the ZNF336 gene for zinc finger protein 336, two putative novel genes, the NAPB gene for N-ethylmaleimide-sensitive factor attachment protein beta, the CSTL1 gene for cystatin-like 1, the CST11 gene for cystatin 11 and six CpG islands, complete sequence Length = 112180 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 42775 caaaattcaactgtatttctatac 42798
>emb|AL049641.11|HSDA22P16 Human DNA sequence from clone RP6-22P16 on chromosome Xq11.1-13.1 Contains a zinc finger protein 208 (ZNF208) pseudogene, complete sequence Length = 103367 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 |||||||||| ||||||||||||| Sbjct: 67212 caaaactcaattgtatttctatac 67235
>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains the MAFB gene for v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian), a novel gene and two CpG islands, complete sequence Length = 145593 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 13232 caaaaatcaactgtatttctatac 13255
>emb|AL009181.1|HS212P9 Human DNA sequence from clone RP1-212P9 on chromosome 1p34.1-35 Contains the OPRD1 gene for opioid receptor delta 1, two novel genes, the 5' end of the EPB41 gene for erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) and a CpG island, complete sequence Length = 148540 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 tcaaaactcaactgtatttctata 39 |||||| ||||||||||||||||| Sbjct: 20058 tcaaaaatcaactgtatttctata 20081
>gb|AC007998.10| Homo sapiens chromosome 18, clone RP11-322E11, complete sequence Length = 207799 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 56889 caaaaatcaactgtatttctatac 56866
>emb|AL109946.12|HSJ820B18 Human DNA sequence from clone RP5-820B18 on chromosome Xq22.2-23 Contains part of a novel gene for a protein similar to nuclear cap binding protein and the 5' end of the MID1 gene for midline 1 (Opitz/BBB syndrome) protein, complete sequence Length = 94081 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 9071 caaaaatcaactgtatttctatac 9094
>gb|AC124892.8| Homo sapiens 12 BAC RP11-574B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 20925 Score = 40.1 bits (20), Expect = 0.76 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 caaaaaattcttcctcaaaa 21 |||||||||||||||||||| Sbjct: 8262 caaaaaattcttcctcaaaa 8243
>gb|AC120053.4| Homo sapiens chromosome 8, clone CTD-2006H14, complete sequence Length = 124497 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 5161 caaaaatcaactgtatttctatac 5184
>gb|AC010834.19| Homo sapiens chromosome 8, clone RP11-10N23, complete sequence Length = 175967 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 65642 caaaaatcaactgtatttctatac 65619
>emb|BX511134.8| Zebrafish DNA sequence from clone CH211-134C9 in linkage group 1, complete sequence Length = 188290 Score = 40.1 bits (20), Expect = 0.76 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaaaattcttcctcaaaac 22 |||||||||||||||||||| Sbjct: 61397 aaaaaattcttcctcaaaac 61416
>gb|AC008281.3| Homo sapiens BAC clone RP11-481E6 from 2, complete sequence Length = 131085 Score = 40.1 bits (20), Expect = 0.76 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaaactcaactgtatttcta 37 |||||||||||||||||||| Sbjct: 85055 aaaactcaactgtatttcta 85036
>gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence Length = 149172 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 40483 caaaaatcaactgtatttctatac 40506
>gb|AC010087.3| Homo sapiens BAC clone RP11-241M13 from 2, complete sequence Length = 202029 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 131285 caaaaatcaactgtatttctatac 131308
>gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, complete sequence Length = 166870 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 55239 caaaaatcaactgtatttctatac 55216
>gb|AF245226.1|AF245226 Homo sapiens chromosome 21 map 21q21 clone B845I12, complete sequence Length = 178237 Score = 40.1 bits (20), Expect = 0.76 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaaaattcttcctcaaaac 22 |||||||||||||||||||| Sbjct: 139920 aaaaaattcttcctcaaaac 139939
>dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, section 18/105 Length = 340000 Score = 40.1 bits (20), Expect = 0.76 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaaaattcttcctcaaaac 22 |||||||||||||||||||| Sbjct: 276715 aaaaaattcttcctcaaaac 276734
>dbj|AP000486.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-23I22, complete sequence Length = 152472 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctatac 40 ||||| |||||||||||||||||| Sbjct: 113042 caaaaatcaactgtatttctatac 113065
>dbj|AP003467.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1205A7 Length = 150708 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 attcttcctcaaaactcaactgta 31 |||||||| ||||||||||||||| Sbjct: 90541 attcttccacaaaactcaactgta 90518
>emb|AL157359.1|HSP19646 Homo sapiens chromosome 21 sequence from PAC RP4-646P19 map 21q21 region D21S189-LA297, complete sequence Length = 121360 Score = 40.1 bits (20), Expect = 0.76 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaaaaattcttcctcaaaac 22 |||||||||||||||||||| Sbjct: 1095 aaaaaattcttcctcaaaac 1076
>emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE Length = 136545 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 aaaaattcttcctcaaaactcaac 27 |||||||||||||| ||||||||| Sbjct: 58235 aaaaattcttcctctaaactcaac 58212
>emb|AL669959.22| Mouse DNA sequence from clone RP23-221H6 on chromosome 4, complete sequence Length = 213801 Score = 40.1 bits (20), Expect = 0.76 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aattcttcctcaaaactcaa 26 |||||||||||||||||||| Sbjct: 23072 aattcttcctcaaaactcaa 23053
>dbj|AP003551.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1967D12, complete sequence Length = 160952 Score = 40.1 bits (20), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 attcttcctcaaaactcaactgta 31 |||||||| ||||||||||||||| Sbjct: 8941 attcttccacaaaactcaactgta 8918
>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence Length = 181038 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ttctatactgtaaaactat 51 ||||||||||||||||||| Sbjct: 155161 ttctatactgtaaaactat 155143
>gb|AF148647.1| Homo sapiens 1;17 constitutional breakpoint genomic sequence Length = 51050 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 7142 caaaaatcaactgtatttctata 7164
>gb|U80838.1| Caenorhabditis elegans cosmid F47F6, complete sequence Length = 40615 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaaaattcttcctcaaaa 21 ||||||||||||||||||| Sbjct: 2170 aaaaaattcttcctcaaaa 2188
>ref|XM_420680.1| PREDICTED: Gallus gallus fat1-like (LOC395168), mRNA Length = 10289 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaaaaattcttcctcaaaa 21 ||||||||||||||||||| Sbjct: 4839 aaaaaattcttcctcaaaa 4821
>emb|CR853302.11| Zebrafish DNA sequence from clone DKEY-91M3 in linkage group 11, complete sequence Length = 231837 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 gtatttctatactgtaaaa 47 ||||||||||||||||||| Sbjct: 89228 gtatttctatactgtaaaa 89210
>emb|AL096888.30|HSJ902P15 Human DNA sequence from clone RP5-902P15 on chromosome 1p31.3-32.2 Contains the 3' end of the NFIA gene for nuclear factor I/A, complete sequence Length = 123391 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 tatatctgccctgcccaat 67 ||||||||||||||||||| Sbjct: 91616 tatatctgccctgcccaat 91634
>emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chromosome 17, complete sequence Length = 197576 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaaaattcttcctcaaaa 21 ||||||||||||||||||| Sbjct: 87686 aaaaaattcttcctcaaaa 87704
>gb|AF016660.3| Caenorhabditis elegans cosmid F53A10, complete sequence Length = 33272 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaaaattcttcctcaaaa 21 ||||||||||||||||||| Sbjct: 30342 aaaaaattcttcctcaaaa 30360
>emb|BX510661.4| Human DNA sequence from clone RP13-766B11 on chromosome X, complete sequence Length = 52942 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aaaactcaactgtatttctatac 40 ||||||||| ||||||||||||| Sbjct: 42936 aaaactcaattgtatttctatac 42958
>emb|BX276092.9| Human DNA sequence from clone RP11-402P6 on chromosome X Contains five novel genes, five NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogenes and two CpG islands, complete sequence Length = 201575 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 141917 caaaaatcaactgtatttctata 141939 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 36843 caaaaatcaactgtatttctata 36821
>emb|AL591004.3| Human DNA sequence from clone RP11-497F24 on chromosome 6, complete sequence Length = 159845 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 67887 caaaattcaactgtatttctata 67909
>emb|AL451007.17| Human DNA sequence from clone RP11-173A6 on chromosome 1 Contains the 3' end of the gene for CGI-146 protein (PNAS-4), a ribosomal protein L37 (RPL37) pseudogene and a CpG island, complete sequence Length = 114191 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 103621 caaaaatcaactgtatttctata 103643
>emb|AL513353.7| Human DNA sequence from clone RP11-309N12 on chromosome 9 Contains part of the AUH gene for AU RNA binding protein/enoyl-Coenzyme A hydratase, complete sequence Length = 105225 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 94230 caaaaatcaactgtatttctata 94252
>emb|AL390029.35| Human DNA sequence from clone RP11-560N15 on chromosome 13 Contains part of the DCAMKL1 gene for doublecortin and CaM kinase-like 1 (DCLK KIAA0369) and a CpG island, complete sequence Length = 164317 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 147022 caaaaatcaactgtatttctata 147044
>emb|AL390023.8| Human DNA sequence from clone RP5-926E3 on chromosome 1p32.3-34.1 Contains part of the gene for a novel protein and a pseudogene similar to part of ribosomal protein S11 (RPS11), complete sequence Length = 131237 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 aactcaactgtatttctat 38 ||||||||||||||||||| Sbjct: 70019 aactcaactgtatttctat 70037
>emb|AL161454.10| Human DNA sequence from clone RP11-72B4 on chromosome 9 Contains the gene for a novel protein similar to putative repair and recombination helicase RAD26L (LOC56959), a parkinson disease 7 (PARK7) pseudogene, the 5' end of a novel gene and a CpG island, complete sequence Length = 144536 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aaaactcaactgtatttctatac 40 |||| |||||||||||||||||| Sbjct: 102842 aaaaatcaactgtatttctatac 102864
>emb|AL136166.6| Human DNA sequence from clone RP11-36B23 on chromosome X Contains part of a novel gene, complete sequence Length = 102105 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 aaaactcaactgtatttctatac 40 |||| |||||||||||||||||| Sbjct: 46909 aaaagtcaactgtatttctatac 46887
>emb|AL132774.20|HSDJ402L9 Human DNA sequence from clone RP3-402L9 on chromosome 6q25-26.1 Contains the 3' end of the OPRM1 gene for opiate receptor, mu 1 (MOR-1) and the 3' end of the gene for phosphoinositide-binding protein PIP3-E (KIAA0403), complete sequence Length = 98104 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 42475 caaaaatcaactgtatttctata 42497
>emb|AL132981.12|HSDJ80L13 Human DNA sequence from clone RP1-80L13 on chromosome 20 Contains STSs and GSSs, complete sequence Length = 112186 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 84130 caaaaatcaactgtatttctata 84152
>gb|AC104482.2| Sus scrofa clone RP44-423C21, complete sequence Length = 164846 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aaaactcaactgtatttctatac 40 |||| |||||||||||||||||| Sbjct: 158849 aaaaatcaactgtatttctatac 158871
>emb|AL391734.1|ATF22J12 Arabidopsis thaliana DNA chromosome 3, BAC clone F22J12 Length = 100231 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 atactgtaaaactatatct 55 ||||||||||||||||||| Sbjct: 83269 atactgtaaaactatatct 83251
>gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome 8, complete sequence Length = 234359 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 aactatatctgccctgcccaatt 68 |||||||||||||||||| |||| Sbjct: 86939 aactatatctgccctgccaaatt 86917
>emb|CR931739.1| Medicago truncatula chromosome 5 clone mth2-7j2, COMPLETE SEQUENCE Length = 117611 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaaaaattcttcctcaaaa 21 ||||||||||||||||||| Sbjct: 24107 aaaaaattcttcctcaaaa 24089
>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence Length = 181253 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 attcttcctcaaaactcaa 26 ||||||||||||||||||| Sbjct: 5030 attcttcctcaaaactcaa 5048
>gb|AC117485.4| Homo sapiens 3 BAC CTD-2501O3 (Cal Tech Human BAC Library D) complete sequence Length = 144728 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 46514 caaaaatcaactgtatttctata 46492
>gb|AC012083.6| Homo sapiens 12 BAC RP11-864A19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166257 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 30 tatttctatactgtaaaactata 52 ||||| ||||||||||||||||| Sbjct: 29969 tatttttatactgtaaaactata 29947
>gb|AC027152.11| Homo sapiens chromosome 17, clone RP11-456D7, complete sequence Length = 132735 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 caactgtatttctatactg 42 ||||||||||||||||||| Sbjct: 47563 caactgtatttctatactg 47581
>gb|AC090627.4| Homo sapiens chromosome 17, clone CTD-2365J3, complete sequence Length = 136843 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 caactgtatttctatactg 42 ||||||||||||||||||| Sbjct: 125483 caactgtatttctatactg 125501
>gb|AC093637.5| Homo sapiens BAC clone RP11-239C17 from 4, complete sequence Length = 111211 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 aaaattcttcctcaaaact 23 ||||||||||||||||||| Sbjct: 7573 aaaattcttcctcaaaact 7555
>gb|AC009051.8| Homo sapiens chromosome 16 clone RP11-238M18, complete sequence Length = 157691 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaaaaattcttcctcaaaa 21 ||||||||||||||||||| Sbjct: 48634 aaaaaattcttcctcaaaa 48616
>gb|AC009522.11| Homo sapiens 12 BAC RP11-591N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128666 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aattcttcctcaaaactca 25 ||||||||||||||||||| Sbjct: 17723 aattcttcctcaaaactca 17705
>gb|AC022161.8| Homo sapiens chromosome 16 clone RP11-273P11, complete sequence Length = 181541 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 15450 caaaagtcaactgtatttctata 15428
>gb|AC022166.7| Homo sapiens chromosome 16 clone RP11-525K10, complete sequence Length = 163998 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 |||||||||| |||||||||||| Sbjct: 115337 caaaactcaattgtatttctata 115359
>gb|AC024614.5|AC024614 Homo sapiens chromosome 17, clone RP11-118G23, complete sequence Length = 158560 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 155941 caaaaatcaactgtatttctata 155919
>gb|AC011824.8|AC011824 Homo sapiens chromosome , clone RP11-31I22, complete sequence Length = 141738 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 15276 caaaaatcaactgtatttctata 15254
>gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, complete sequence Length = 163976 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 |||||||||| |||||||||||| Sbjct: 161926 caaaactcaattgtatttctata 161904
>gb|AC136285.2| Homo sapiens chromosome 16 clone RP11-899L11, complete sequence Length = 235286 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaaaaattcttcctcaaaa 21 ||||||||||||||||||| Sbjct: 145707 aaaaaattcttcctcaaaa 145689
>gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome 8, complete sequence Length = 207128 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 aactatatctgccctgcccaatt 68 |||||||||||||||||| |||| Sbjct: 192217 aactatatctgccctgccaaatt 192195
>gb|AC079411.6| Homo sapiens chromosome 16 clone CTD-2050B12, complete sequence Length = 114356 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 55417 caaaagtcaactgtatttctata 55439
>gb|AC013718.6| Homo sapiens BAC clone RP11-116I17 from 2, complete sequence Length = 177855 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 aaaactcaactgtatttct 36 ||||||||||||||||||| Sbjct: 61991 aaaactcaactgtatttct 62009
>gb|AC079394.3| Homo sapiens BAC clone RP11-125F24 from 2, complete sequence Length = 60945 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaaaattcttcctcaaaac 22 ||||||||||||||||||| Sbjct: 16647 aaaaattcttcctcaaaac 16665
>gb|AC130289.11| Homo sapiens chromosome 17, clone RP1-66C13, complete sequence Length = 136599 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 tcaactgtatttctatact 41 ||||||||||||||||||| Sbjct: 32666 tcaactgtatttctatact 32648
>emb|AL590763.2|HSXDPB Homo sapiens chromosome X sequence from 6 PACs 1 BAC and 1 cosmid, region GJB1-DXS559 map Xq13.1, complete sequence Length = 248968 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 ||||| ||||||||||||||||| Sbjct: 229846 caaaaatcaactgtatttctata 229824
>emb|BX005382.6| Zebrafish DNA sequence from clone DKEY-242E14, complete sequence Length = 161366 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 gtatttctatactgtaaaa 47 ||||||||||||||||||| Sbjct: 25083 gtatttctatactgtaaaa 25065
>gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence Length = 93393 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aaaactcaactgtatttctatac 40 |||| |||||||||||||||||| Sbjct: 1034 aaaaatcaactgtatttctatac 1056
>emb|AL512357.4|CNS07EF6 Human chromosome 14 DNA sequence BAC R-260M19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174612 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 caaaactcaactgtatttctata 39 |||||||||| |||||||||||| Sbjct: 137224 caaaactcaattgtatttctata 137202
>emb|BX005210.10| Zebrafish DNA sequence from clone DKEY-222F8 in linkage group 4, complete sequence Length = 207949 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 tatttctatactgtaaaac 48 ||||||||||||||||||| Sbjct: 62764 tatttctatactgtaaaac 62782
>emb|AL162311.5|CNS01RHR Human chromosome 14 DNA sequence BAC R-317N8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 167127 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 aaaactcaactgtatttctatac 40 |||| |||||||||||||||||| Sbjct: 155943 aaaaatcaactgtatttctatac 155921
>emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-862G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 210869 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 ctcaactgtatttctatac 40 ||||||||||||||||||| Sbjct: 123653 ctcaactgtatttctatac 123635
>emb|AL137818.4|CNS01DWP Human chromosome 14 DNA sequence BAC R-102C24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179714 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 aaaactcaactgtatttctatac 40 |||| |||||||||||||||||| Sbjct: 16299 aaaaatcaactgtatttctatac 16277
>emb|AL671733.6| Mouse DNA sequence from clone RP23-83I22 on chromosome 4, complete sequence Length = 186686 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 tcttcctcaaaactcaact 28 ||||||||||||||||||| Sbjct: 106482 tcttcctcaaaactcaact 106464
>emb|AL670446.8| Mouse DNA sequence from clone RP23-291H3 on chromosome 4, complete sequence Length = 171444 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 tcttcctcaaaactcaact 28 ||||||||||||||||||| Sbjct: 163268 tcttcctcaaaactcaact 163250
>emb|AL354047.6|HS66C13 Homo sapiens chromosome 17 from PAC RPCI-1 66C13 map 17p11.2 region D17S842-D17S953, complete sequence Length = 156907 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 tcaactgtatttctatact 41 ||||||||||||||||||| Sbjct: 32666 tcaactgtatttctatact 32648
>gb|AC087207.11| Homo sapiens chromosome 11, clone RP11-677N16, complete sequence Length = 136415 Score = 38.2 bits (19), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 caaaactcaactgtatttctata 39 |||||||||| |||||||||||| Sbjct: 43767 caaaactcaattgtatttctata 43789
>emb|AL645857.11| Mouse DNA sequence from clone RP23-167N2 on chromosome X, complete sequence Length = 137904 Score = 38.2 bits (19), Expect = 3.0 Identities = 31/35 (88%) Strand = Plus / Plus Query: 5 aaaattcttcctcaaaactcaactgtatttctata 39 |||||||| | |||||||| |||||||||||||| Sbjct: 36291 aaaattctgcttcaaaactatactgtatttctata 36325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 924,008 Number of Sequences: 3902068 Number of extensions: 924008 Number of successful extensions: 71720 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71572 Number of HSP's gapped (non-prelim): 148 length of query: 75 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 54 effective length of database: 17,151,101,840 effective search space: 926159499360 effective search space used: 926159499360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
