ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 33 0.18
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 33 0.18
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 32 0.51
4IF4E2_ARATH (O04663) Eukaryotic translation initiation factor 4E... 27 9.7
5TX13B_HUMAN (Q9BXU2) Testis-expressed sequence 13B protein 27 9.7

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = -1

Query: 337  VPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 242
            VPSYRRHL              DIPLVSVYFR
Sbjct: 1020 VPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = -1

Query: 337  VPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 242
            VPSYRRHL              DIPLVSVYFR
Sbjct: 1020 VPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 17/32 (53%), Positives = 17/32 (53%)
 Frame = -1

Query: 337  VPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 242
            VP YRRHL              DIPLVSVYFR
Sbjct: 1022 VPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053



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>IF4E2_ARATH (O04663) Eukaryotic translation initiation factor 4E-2 (eIF4E-2)|
           (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25
           kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso
           protein) (eIF(iso)4E)
          Length = 198

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 88  DHWGLIWSCYQTSRFTRHAQHHL 20
           D WGL  + +QTS+ T +A+ HL
Sbjct: 61  DFWGLHETIFQTSKLTANAEIHL 83



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>TX13B_HUMAN (Q9BXU2) Testis-expressed sequence 13B protein|
          Length = 312

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 96  HRDGRKENQSVMWLKPPLSLQSLMQLMTCQSIRHDQPQDHVNTDEALLQ 242
           HR G+ +N+ V WL+    L     L+   ++   + Q  +  +EA  Q
Sbjct: 80  HRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEMECNEATFQ 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,523,494
Number of Sequences: 219361
Number of extensions: 740740
Number of successful extensions: 1438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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