ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 410 e-111
2gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 206 3e-50
3gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence 109 6e-21
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
6dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
7dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
8dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 74 3e-10
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 74 3e-10
11emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 74 3e-10
12emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 74 3e-10
13emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 74 3e-10
14gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, ... 48 0.018
15ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activati... 46 0.072
16gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 ma... 46 0.072
17gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, co... 46 0.072
18dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin... 46 0.072
19gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, co... 46 0.072
20gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating e... 46 0.072
21emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Co... 46 0.072
22emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Co... 46 0.072
23emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Co... 46 0.072
24emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiqui... 44 0.29
25gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 4.5
26ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM016... 40 4.5
27ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM023... 40 4.5
28gb|AE014075.1| Escherichia coli CFT073, complete genome 40 4.5
29gb|CP000243.1| Escherichia coli UTI89, complete genome 40 4.5
30gb|AC091924.4| Homo sapiens chromosome 5 clone RP11-268L12, comp... 40 4.5
31dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 4.5
32gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Can... 40 4.5
33gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite s... 40 4.5
34emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragm... 40 4.5
35emb|AM236324.1| Escherichia coli genome fragment containing the ... 40 4.5 
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score =  410 bits (207), Expect = e-111
 Identities = 293/319 (91%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                        
Query: 21   agatgatgttgtgcgt-gtcttgtgaatcgtgatgtctggtaacaactccagatcagccc 79
            |||||||||||||| | |||| |||||| || ||||||||||||||| | ||||||||||
Sbjct: 3653 agatgatgttgtgcctagtctcgtgaatagttatgtctggtaacaacccgagatcagccc 3594

                                                                        
Query: 80   ccaatgatccaatcgacatcgagatggtagaaaggaaaa-tcagtcagtaatgtggctta 138
            |||||||||| ||||||||| |||||||||||||||||| ||||||  ||||||||||||
Sbjct: 3593 ccaatgatccgatcgacatcaagatggtagaaaggaaaaatcagtcgataatgtggctta 3534

                                                                        
Query: 139  agcccccactcagcttacagtcactaatgcaactcatgacttgtcagtcgatcagacatg 198
            ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||   ||||
Sbjct: 3533 agcccccactcagcttacaatcactaatgcgactcatgacatgtcagtcgatccagcatg 3474

                                                                        
Query: 199  accaaccacaagatcatgtgaacacagatgaagcgcttcttcagcggaagtagacagaca 258
            ||||||||||||||||||| ||| |||| | |||||||||||||||||||||||| ||||
Sbjct: 3473 accaaccacaagatcatgtaaacgcagaaggagcgcttcttcagcggaagtagaccgaca 3414

                                                                        
Query: 259  caagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagat 318
            |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 3413 caagtgggatgtcgacatcgttgtcgtcgtcatcctcacaggccaccacaacgtcgagat 3354

                               
Query: 319  gacgccggtaagagggcac 337
            |||||||||||||||||||
Sbjct: 3353 gacgccggtaagagggcac 3335
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>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  206 bits (104), Expect = 3e-50
 Identities = 143/156 (91%)
 Strand = Plus / Minus

                                                                        
Query: 182  tcagtcgatcagacatgaccaaccacaagatcatgtgaacacagatgaagcgcttcttca 241
            ||||| |||||  ||||||||||||||||||||| | ||| |||| | ||||||||||||
Sbjct: 3395 tcagtagatcaagcatgaccaaccacaagatcatttaaacgcagaaggagcgcttcttca 3336

                                                                        
Query: 242  gcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggc 301
            |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 3335 gcggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctcacacgc 3276

                                                
Query: 302  caccacgacgtcgagatgacgccggtaagagggcac 337
            ||||||||||||||||||||||||||||||||||||
Sbjct: 3275 caccacgacgtcgagatgacgccggtaagagggcac 3240



 Score =  167 bits (84), Expect = 3e-38
 Identities = 122/132 (92%), Gaps = 2/132 (1%)
 Strand = Plus / Minus

                                                                        
Query: 21   agatgatgttgtgcgt-gtcttgtgaatcgtgatgtctggtaacaactccagatcagccc 79
            |||||||||||||| | |||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 3534 agatgatgttgtgcctagtctcgtgaatcatgatgtctggtaacaacccgagatcagccc 3475

                                                                        
Query: 80   ccaatgatccaatcgacatcga-gatggtagaaaggaaaatcagtcagtaatgtggctta 138
            |||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct: 3474 ccaatgatccgatcgacatcaaagatggtagaaaggaaaatcagtcggtaatgtggctta 3415

                        
Query: 139  agcccccactca 150
            ||||||||||||
Sbjct: 3414 agcccccactca 3403
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>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence
          Length = 836

 Score =  109 bits (55), Expect = 6e-21
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                       
Query: 243 cggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggcc 302
           |||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 779 cggaagtaaatagacacaagcgggatgtcgacgtcattgtcatcgtcatcctcacaggcc 720

                                              
Query: 303 accacgacgtcgagatgacgccggtaagagggcac 337
           ||||| ||||| ||||| || ||||| || |||||
Sbjct: 719 accacaacgtccagatggcggcggtaggaaggcac 685
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                          
Query: 237    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                                                       
Query: 297    caggccaccacgacgtcgagatgacgccggtaagagggcac 337
              || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcac 312250



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 123    tcagtaatgtggcttaagcccccactcagcttacag 158
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                          
Query: 237    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                                                       
Query: 297    caggccaccacgacgtcgagatgacgccggtaagagggcac 337
              || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcac 295148



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 123    tcagtaatgtggcttaagcccccactcagcttacag 158
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
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>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
            insert sequence
          Length = 3724

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                        
Query: 237  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 3469 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 3410

                                                     
Query: 297  caggccaccacgacgtcgagatgacgccggtaagagggcac 337
            || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 3409 caagccaccaccacgtcaagatggcgccggtatgggggcac 3369



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 123  tcagtaatgtggcttaagcccccactcagcttacag 158
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 3580 tcagtaatgtggcttaaacccccacttagtttacag 3545
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>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full
            insert sequence
          Length = 1533

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                        
Query: 237  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1362 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1303

                                                     
Query: 297  caggccaccacgacgtcgagatgacgccggtaagagggcac 337
            || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 1302 caagccaccaccacgtcaagatggcgccggtatgggggcac 1262



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 123  tcagtaatgtggcttaagcccccactcagcttacag 158
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1473 tcagtaatgtggcttaaacccccacttagtttacag 1438
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>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full
            insert sequence
          Length = 1510

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                        
Query: 237  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1253 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1194

                                                     
Query: 297  caggccaccacgacgtcgagatgacgccggtaagagggcac 337
            || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 1193 caagccaccaccacgtcaagatggcgccggtatgggggcac 1153



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 123  tcagtaatgtggcttaagcccccactcagcttacag 158
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1364 tcagtaatgtggcttaaacccccacttagtttacag 1329
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                          
Query: 237    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                                                       
Query: 297    caggccaccacgacgtcgagatgacgccggtaagagggcac 337
              || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcac 295148



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 123    tcagtaatgtggcttaagcccccactcagcttacag 158
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                          
Query: 237    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                                                       
Query: 297    caggccaccacgacgtcgagatgacgccggtaagagggcac 337
              || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcac 312250



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 123    tcagtaatgtggcttaagcccccactcagcttacag 158
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                        
Query: 237  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 9945 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 9886

                                                     
Query: 297  caggccaccacgacgtcgagatgacgccggtaagagggcac 337
            || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 9885 caagccaccaccacgtcaagatggcgccggtatgggggcac 9845



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 123   tcagtaatgtggcttaagcccccactcagcttacag 158
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 10056 tcagtaatgtggcttaaacccccacttagtttacag 10021
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                         
Query: 237   cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
             ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 45201 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 45260

                                                      
Query: 297   caggccaccacgacgtcgagatgacgccggtaagagggcac 337
             || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 45261 caagccaccaccacgtcaagatggcgccggtatgggggcac 45301



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 123   tcagtaatgtggcttaagcccccactcagcttacag 158
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 45090 tcagtaatgtggcttaaacccccacttagtttacag 45125
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                        
Query: 237  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 296
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 2366 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 2425

                                                     
Query: 297  caggccaccacgacgtcgagatgacgccggtaagagggcac 337
            || |||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 2426 caagccaccaccacgtcaagatggcgccggtatgggggcac 2466



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 123  tcagtaatgtggcttaagcccccactcagcttacag 158
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 2255 tcagtaatgtggcttaaacccccacttagtttacag 2290
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>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3588

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 241  agcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacagg 300
            |||||||||| || ||||| || ||||||||||| ||||| || || || ||||| ||||
Sbjct: 3345 agcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgtcctcgtcctcgcagg 3286

                
Query: 301  ccac 304
            ||||
Sbjct: 3285 ccac 3282
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>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110
            (ATUBA1) mRNA, complete cds
          Length = 3626

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3360 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3301

               
Query: 305  cac 307
            |||
Sbjct: 3300 cac 3298
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>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete
             sequence
          Length = 83796

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 245   gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
             |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 53002 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 52943

                
Query: 305   cac 307
             |||
Sbjct: 52942 cac 52940
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>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds
          Length = 3561

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3321 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3262

               
Query: 305  cac 307
            |||
Sbjct: 3261 cac 3259
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>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme,
           complete cds, clone: RAFL22-01-B01
          Length = 474

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 245 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 208 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 149

              
Query: 305 cac 307
           |||
Sbjct: 148 cac 146
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>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds
          Length = 3243

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3237 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3178

               
Query: 305  cac 307
            |||
Sbjct: 3177 cac 3175
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>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene,
            complete cds
          Length = 3346

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3334 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3275

               
Query: 305  cac 307
            |||
Sbjct: 3274 cac 3272
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>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 646

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 245 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 390 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 331

              
Query: 305 cac 307
           |||
Sbjct: 330 cac 328
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>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1375

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 1167 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 1108

               
Query: 305  cac 307
            |||
Sbjct: 1107 cac 1105
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>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 930

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 245 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 304
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 673 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 614

              
Query: 305 cac 307
           |||
Sbjct: 613 cac 611
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>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1
           (ORF), clone CanUBC-1
          Length = 807

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 279 ttgtcatcgtcatcctcacaggccac 304
           ||||||||||||||||| ||||||||
Sbjct: 484 ttgtcatcgtcatcctcgcaggccac 459
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>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    acatcgttgtcatcgtcatc 292
              ||||||||||||||||||||
Sbjct: 158321 acatcgttgtcatcgtcatc 158340
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>ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM01632.1) partial mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 269 gtcgacatcgttgtcatcgtcatc 292
           |||| |||||||||||||||||||
Sbjct: 585 gtcgtcatcgttgtcatcgtcatc 562
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>ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM02379.1) partial mRNA
          Length = 3270

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  tcacaggccaccacgacgtc 313
            ||||||||||||||||||||
Sbjct: 2191 tcacaggccaccacgacgtc 2210
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 39      cttgtgaatcgtgatgtctg 58
               ||||||||||||||||||||
Sbjct: 2258336 cttgtgaatcgtgatgtctg 2258355
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 39      cttgtgaatcgtgatgtctg 58
               ||||||||||||||||||||
Sbjct: 2109514 cttgtgaatcgtgatgtctg 2109533
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>gb|AC091924.4| Homo sapiens chromosome 5 clone RP11-268L12, complete sequence
          Length = 50828

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   gacatgaccaaccacaagat 212
             ||||||||||||||||||||
Sbjct: 31481 gacatgaccaaccacaagat 31500
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     tgaagcgcttcttcagcgga 246
               ||||||||||||||||||||
Sbjct: 1983686 tgaagcgcttcttcagcgga 1983705
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>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    gagatggtagaaaggaaaat 119
              ||||||||||||||||||||
Sbjct: 153914 gagatggtagaaaggaaaat 153933
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>gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite sequence
          Length = 254

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 269 gtcgacatcgttgtcatcgtcatcctca 296
           |||| |||||| ||||||||||||||||
Sbjct: 231 gtcgtcatcgtcgtcatcgtcatcctca 204
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>emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 19b9, forward
           read cpg19b9.ft1a
          Length = 264

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 gaaaggaaaatcagtcagta 128
           ||||||||||||||||||||
Sbjct: 169 gaaaggaaaatcagtcagta 188
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>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and
             pdu gene clusters, strain A0 34/86
          Length = 84189

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    cttgtgaatcgtgatgtctg 58
             ||||||||||||||||||||
Sbjct: 54791 cttgtgaatcgtgatgtctg 54810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,313,127
Number of Sequences: 3902068
Number of extensions: 2313127
Number of successful extensions: 44145
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43999
Number of HSP's gapped (non-prelim): 142
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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