ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chr... 44 0.29
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
3dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
4emb|AL392045.9| Human DNA sequence from clone RP13-408A12 on chr... 42 1.1
5emb|AL592549.7| Human DNA sequence from clone RP11-374B16 on chr... 40 4.5
6gb|AC147816.2| Xenopus tropicalis clone CH216-106C24, complete s... 40 4.5
7gb|AC087397.10| Homo sapiens chromosome 18, clone RP11-594P16, c... 40 4.5
8gb|AC018972.6| Homo sapiens chromosome 18, clone RP11-756M1, com... 40 4.5
9emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 i... 40 4.5
10dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
11gb|AC006952.6|AC006952 Homo sapiens chromosome 9, clone hRPK.374... 40 4.5

>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains part
              of the Abca13 gene for ATP-binding cassette sub-family A
              (ABC1) member 13, complete sequence
          Length = 205759

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2      tctttttattaagatatgaatg 23
              ||||||||||||||||||||||
Sbjct: 102395 tctttttattaagatatgaatg 102416



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 3        ctttttattaagatatgaatgg 24
                ||||||||||||||||||||||
Sbjct: 25175700 ctttttattaagatatgaatgg 25175679



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 4        tttttattaagatatgaatg 23
                ||||||||||||||||||||
Sbjct: 28278365 tttttattaagatatgaatg 28278384



to top

>dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0035I14
          Length = 117919

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 3     ctttttattaagatatgaatgg 24
             ||||||||||||||||||||||
Sbjct: 41709 ctttttattaagatatgaatgg 41688



to top

>emb|AL392045.9| Human DNA sequence from clone RP13-408A12 on chromosome 10, complete
             sequence
          Length = 161933

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    aaagcagatacaaaatggcca 46
             |||||||||||||||||||||
Sbjct: 55695 aaagcagatacaaaatggcca 55715



to top

>emb|AL592549.7| Human DNA sequence from clone RP11-374B16 on chromosome 9, complete
              sequence
          Length = 128613

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 6      tttattaagatatgaatgggaaagcaga 33
              ||||| |||| |||||||||||||||||
Sbjct: 119265 tttatgaagaaatgaatgggaaagcaga 119292



to top

>gb|AC147816.2| Xenopus tropicalis clone CH216-106C24, complete sequence
          Length = 152642

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 286   tctaaaagcacacttatcaagaga 309
             ||||||||||||||||| ||||||
Sbjct: 41122 tctaaaagcacacttattaagaga 41145



to top

>gb|AC087397.10| Homo sapiens chromosome 18, clone RP11-594P16, complete sequence
          Length = 185912

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 20     aatgggaaagcagatacaaaatgg 43
              |||||||||||| |||||||||||
Sbjct: 146355 aatgggaaagcatatacaaaatgg 146378



to top

>gb|AC018972.6| Homo sapiens chromosome 18, clone RP11-756M1, complete sequence
          Length = 160602

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    aatgggaaagcagatacaaaatgg 43
             |||||||||||| |||||||||||
Sbjct: 21121 aatgggaaagcatatacaaaatgg 21144



to top

>emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 in linkage group 3,
             complete sequence
          Length = 147441

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tcacttgtataagtgcagca 75
             ||||||||||||||||||||
Sbjct: 38883 tcacttgtataagtgcagca 38864



to top

>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      tttttattaagatatgaatg 23
              ||||||||||||||||||||
Sbjct: 112872 tttttattaagatatgaatg 112891



to top

>gb|AC006952.6|AC006952 Homo sapiens chromosome 9, clone hRPK.374_B_16, complete sequence
          Length = 219345

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 6      tttattaagatatgaatgggaaagcaga 33
              ||||| |||| |||||||||||||||||
Sbjct: 170590 tttatgaagaaatgaatgggaaagcaga 170617


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,440,558
Number of Sequences: 3902068
Number of extensions: 2440558
Number of successful extensions: 40745
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40716
Number of HSP's gapped (non-prelim): 29
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top