ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEM1_RAT (P13195) 5-aminolevulinate synthase, nonspecific, mitoc... 28 6.8
2HEM1_CHICK (P07997) 5-aminolevulinate synthase, nonspecific, mit... 28 8.8
3HEM1_MOUSE (Q8VC19) 5-aminolevulinate synthase, nonspecific, mit... 28 8.8

>HEM1_RAT (P13195) 5-aminolevulinate synthase, nonspecific, mitochondrial|
           precursor (EC 2.3.1.37) (5-aminolevulinic acid synthase)
           (Delta-aminolevulinate synthase) (Delta-ALA synthetase)
           (ALAS-H)
          Length = 642

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 22  HLPYIFDAASPKIIFEYKIIYTLHQKPYGMATTNPLRRPMHAQMNSPR 165
           H P + +    K++  +K +  L  KP+  A  N  RRP+H ++ S R
Sbjct: 580 HTPQMMNFFLEKLLLTWKRV-GLELKPHSSAECNFCRRPLHFEVMSER 626



to top

>HEM1_CHICK (P07997) 5-aminolevulinate synthase, nonspecific, mitochondrial|
           precursor (EC 2.3.1.37) (5-aminolevulinic acid synthase)
           (Delta-aminolevulinate synthase) (Delta-ALA synthetase)
           (ALAS-H)
          Length = 635

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 22  HLPYIFDAASPKIIFEYKIIYTLHQKPYGMATTNPLRRPMHAQMNSPRIR 171
           H P +      K++  +K +  L  KP+  A  N  RRP+H ++ S R R
Sbjct: 573 HTPQMMSYFLEKLLATWKDV-GLELKPHSSAECNFCRRPLHFEVMSERER 621



to top

>HEM1_MOUSE (Q8VC19) 5-aminolevulinate synthase, nonspecific, mitochondrial|
           precursor (EC 2.3.1.37) (5-aminolevulinic acid synthase)
           (Delta-aminolevulinate synthase) (Delta-ALA synthetase)
           (ALAS-H)
          Length = 642

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 22  HLPYIFDAASPKIIFEYKIIYTLHQKPYGMATTNPLRRPMHAQMNSPR 165
           H P + +    K++  +K +  L  KP+  A  N  RRP+H ++ S R
Sbjct: 580 HTPQMMNFFVEKLLVTWKRV-GLELKPHSSAECNFCRRPLHFEVMSER 626


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,040,599
Number of Sequences: 219361
Number of extensions: 495939
Number of successful extensions: 1148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 80,573,946
effective HSP length: 33
effective length of database: 73,335,033
effective search space used: 1760040792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top