ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl18e02 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 120 bits (301), Expect = 8e-28 Identities = 58/73 (79%), Positives = 67/73 (91%) Frame = -3 Query: 371 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVPVE 192 L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R +MEE++KAM+VPVE Sbjct: 1018 LRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVE 1077 Query: 191 ELSKRVEELTRLH 153 EL KRVEELTRLH Sbjct: 1078 ELMKRVEELTRLH 1090
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 120 bits (301), Expect = 8e-28 Identities = 58/73 (79%), Positives = 67/73 (91%) Frame = -3 Query: 371 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVPVE 192 L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R +MEE++KAM+VPVE Sbjct: 1023 LRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVE 1082 Query: 191 ELSKRVEELTRLH 153 EL KRVEELTRLH Sbjct: 1083 ELMKRVEELTRLH 1095
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 117 bits (294), Expect = 5e-27 Identities = 57/75 (76%), Positives = 68/75 (90%) Frame = -3 Query: 377 ATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVP 198 ++L K IKGVG LSHEQWRSF+N+K+T+EARNFLDGDLIESFLDL+R KME+++K+M V Sbjct: 1014 SSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQ 1073 Query: 197 VEELSKRVEELTRLH 153 VEEL KRVEELTRLH Sbjct: 1074 VEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 113 bits (283), Expect = 1e-25 Identities = 55/74 (74%), Positives = 65/74 (87%) Frame = -3 Query: 374 TLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVPV 195 +L K IKGVG LSHEQWRSF+N+K+T+EA+ +LDGDLIESFLDL+R KMEE++K M V V Sbjct: 1015 SLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQV 1074 Query: 194 EELSKRVEELTRLH 153 EEL KRVEELTRLH Sbjct: 1075 EELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 76.6 bits (187), Expect = 1e-14 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 10/83 (12%) Frame = -3 Query: 371 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAM----- 207 L K IK VG + H WRSFH ++KT A F+DGDLIESFLD++R KM+EV + Sbjct: 1058 LNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDG 1117 Query: 206 -----AVPVEELSKRVEELTRLH 153 ++L K VEELTR+H Sbjct: 1118 SGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 76.6 bits (187), Expect = 1e-14 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 10/83 (12%) Frame = -3 Query: 371 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAM----- 207 L K IK VG + H WRSFH ++KT A F+DGDLIESFLD++R KM+EV + Sbjct: 1058 LNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDG 1117 Query: 206 -----AVPVEELSKRVEELTRLH 153 ++L K VEELTR+H Sbjct: 1118 SGMKREATADDLIKVVEELTRIH 1140
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 46.2 bits (108), Expect = 2e-05 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Frame = -3 Query: 365 KFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKA------MA 204 K I G LSH++W+ + + +TS + + +DG LIES L L + E+ + Sbjct: 996 KVIPSFGGLSHKEWKEYRGENETSPS-DLIDGSLIESILGLREPILNEIVNGGHEGTKLD 1054 Query: 203 VPVEELSKRVEELTRLH 153 + V++L +E L +LH Sbjct: 1055 ISVQDLKSIIENLEKLH 1071
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 34.7 bits (78), Expect = 0.058 Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Frame = -3 Query: 335 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAM-AVPVEELSKRVEEL 165 H+++RS++ + R +DGDL E+FL L+ + E +AK + +V VE++ + + E+ Sbjct: 1304 HQEYRSYY-----APVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -3 Query: 335 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVPVEELSKRVEEL 165 H ++RS++N K N +DGDLIE F +L++ + + E+ K++ E+ Sbjct: 1199 HLKFRSYYNPVK-----NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 33.1 bits (74), Expect = 0.17 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Frame = -3 Query: 371 LVKFIKGVGSLSHEQWRSFHNDKKT--SEARNFLDGDLIESFLDLNRFKMEEVAKAMAVP 198 L+ + + + L+ +++R+ + KK + +R +DGDLI S+ + + EVAK + Sbjct: 1378 LLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIGTR 1437 Query: 197 VEELSKRVEELTRL 156 EE+ + E+ RL Sbjct: 1438 TEEILGDLLEIERL 1451
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 32.3 bits (72), Expect = 0.29 Identities = 17/57 (29%), Positives = 33/57 (57%) Frame = -3 Query: 335 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVPVEELSKRVEEL 165 H + RS++N K N +DGDL+E FL+ + E+++ + V ++ K++ +L Sbjct: 1162 HLKLRSYYNPIK-----NVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/45 (28%), Positives = 27/45 (60%) Frame = -3 Query: 290 ARNFLDGDLIESFLDLNRFKMEEVAKAMAVPVEELSKRVEELTRL 156 ARN +DGD++E +L L+ + ++A+ + V + + +L R+ Sbjct: 1406 ARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRM 1450
>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 30.8 bits (68), Expect = 0.83 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -3 Query: 326 WRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVPVEELS---KRVEELTRL 156 + +F +D+ + + + D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 80 FENFKDDQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 30.8 bits (68), Expect = 0.83 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -3 Query: 305 KKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVPVEELS---KRVEEL 165 K E+ N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 84 KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)| Length = 303 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Frame = -3 Query: 359 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGDLIESF--LDLNRFKMEEVAKAMA 204 +KGV +L S+E+ ++ HN KK E R +DGD+ + + + + K+E + KA A Sbjct: 47 MKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANA 106
>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)| Length = 298 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Frame = -3 Query: 359 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGD--LIESFLDLNRFKMEEVAKAMA 204 +KGV +L S+E+ ++ HN KK E R +DGD ++ + + + K+E + KA A Sbjct: 42 MKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANA 101
>ODP2_BUCAI (P57302) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 396 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 5/43 (11%) Frame = +1 Query: 235 NLLRSRN-----DSIRSPSRKLRASDVFLSLWNDRHCSWLRLP 348 NL+ +N DS +S +++L SD+ ++ N+ H +W+ +P Sbjct: 147 NLIEEKNKINFGDSKKSKTKELELSDIQKNIGNNLHRNWMNIP 189
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +2 Query: 263 SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLP 379 SG PGS GP + GTTA + +G P+P PG+P Sbjct: 1000 SGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVP 1041
>CCNT1_MOUSE (Q9QWV9) Cyclin-T1 (Cyclin-T) (CycT1)| Length = 724 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -3 Query: 266 LIESFLDLNRFKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 126 +I+SF +R+ M A +A VEE K++E + + VA +HP Sbjct: 71 MIQSFTQFHRYSMAPAALFLAAKVEEQPKKLEHVIK---VAHTCLHP 114
>BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-containing| protein 1) (BCK1-like resistance to osmotic shock protein 1) (Vacuolar protein sorting protein 31) (Amino acid sensor-independent protein 6) (Nitrogen permease inactivating protein Length = 844 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -3 Query: 344 SLSHEQWRSFHNDKKTSE---ARNFLDGDLIESFLDLNRFK 231 S QWR+F+++K TSE RN +G+L S L K Sbjct: 29 SYGSSQWRTFYDEKATSELDHLRNNANGELAPSSLSEQNLK 69
>Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109)| Length = 390 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = -3 Query: 344 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMA-VPVEELSKRVEE 168 +L HE+ S +N + R L GD+ + +NR ++ V A + + + S+ + E Sbjct: 224 NLPHEEVDSLYNKLNWARTRRLLRGDIPSNCATVNRASLQYVKDAQTLLHIAKCSQTIVE 283 Query: 167 LTRL--H*VAPCRVHPVFI 117 R+ + P ++ P+ I Sbjct: 284 FVRIFQQLIFPYQIVPIVI 302
>YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 intergenic| region Length = 785 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = -3 Query: 371 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESF-LDLNRFKMEEVAKAMAVPV 195 L+K IK ++ W+ N+ + EA N ++ L+E N E+V + +P+ Sbjct: 60 LIKDIKFYNDFVNKFWKPTLNNLQKMEATNSMNSRLLEVMSKQFNIISTEQVERDCKIPL 119 Query: 194 EELSKRVEELTR 159 +EL E R Sbjct: 120 QELRDLNESFLR 131
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -3 Query: 269 DLIESFLDLNRFKMEEVAKAMAVPVEELSKRVEELTRLH 153 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1)| Length = 346 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -3 Query: 344 SLSHEQWRSFHNDKKTSEARNFLDGDL 264 S HEQ ++ HN K + R+ +DGD+ Sbjct: 69 SSCHEQSKTLHNAKAVKDLRSKMDGDV 95
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +2 Query: 263 SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLP 379 SG PGS GP + G+TA + +G P+P PG+P Sbjct: 1000 SGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP 1041
>Y429_METAC (Q8TTK2) UPF0272 protein MA0429| Length = 396 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -3 Query: 227 EEVAKAMAVPVEELSKRVEELTR 159 +++AKA +PV E+ +R EE+ R Sbjct: 370 KKIAKASGIPVREIMRRTEEVAR 392
>HB2C_HUMAN (P01914) HLA class II histocompatibility antigen, DR-1 beta chain| precursor (Clone P2-beta-4) Length = 266 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +3 Query: 24 KSKTEKRNVATNT-CRGSFSGRQRFTTQRKRTNKNRMYTARRYLVQSRQLL 173 K E+R A +T CR ++ + FT QR+ K +Y ++ +Q LL Sbjct: 94 KDLLERRRAAVDTYCRHNYGVGESFTVQRRVQPKVTVYPSKTQPLQHHNLL 144
>2B1A_HUMAN (Q30167) HLA class II histocompatibility antigen, DRB1-10 beta| chain precursor (MHC class I antigen DRB1*10) (DRw10) Length = 266 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +3 Query: 24 KSKTEKRNVATNT-CRGSFSGRQRFTTQRKRTNKNRMYTARRYLVQSRQLL 173 K E+R A +T CR ++ + FT QR+ K +Y ++ +Q LL Sbjct: 94 KDLLERRRAAVDTYCRHNYGVGESFTVQRRVQPKVTVYPSKTQPLQHHNLL 144
>HISZ_ANASP (Q8YT12) ATP phosphoribosyltransferase regulatory subunit| Length = 404 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 220 TSSILNLLRSRNDSIRSPSRKLRASDVFLSLWNDRH 327 T+SI + +R ++R P R ++VF +W +RH Sbjct: 79 TASIARAVVTRMANLRHPQRLYYNANVFRRIWENRH 114
>GATB_WOLSU (Q7M7Y2) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 472 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -3 Query: 323 RSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVPVEELSKRVEE 168 RS +++++ R F D DL+ F+D MEE K +P E+ ++ V + Sbjct: 258 RSMRGKEESADYRYFPDPDLLPVFIDAT--LMEEAEKIPELPDEKRARLVRD 307
>SIAE_MOUSE (P70665) Sialate O-acetylesterase precursor (EC 3.1.1.53) (Sialic| acid-specific 9-O-acetylesterase) (Yolk sac protein 2) [Contains: Sialate O-acetylesterase small subunit; Sialate O-acetylesterase large subunit] Length = 541 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +1 Query: 214 LATSSILNLLRSRNDSIRSPSRKLRASDVFLSLWNDRHCSWLRLP 348 LA++ +LNL + ++ K +S +DRHC WL P Sbjct: 441 LASNGLLNLTYDQEIQVQMQDNKTFE----ISCCSDRHCKWLPAP 481
>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14| Length = 827 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -3 Query: 362 FIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEE 222 F KG+ + E+W + + + SE ++ D SF+D + K+EE Sbjct: 344 FGKGLEQENEEEWNGINEEAEESEDEESVNSD--TSFVDDEQLKVEE 388
>YO053_YEAST (Q08223) Uncharacterized protein YOL053W| Length = 395 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 3 VKVTLLSKSKTEKRNVATNTCRGSFSGRQRFTTQRKR 113 V++ L+KS T KRN T + R G+ FTT ++ Sbjct: 82 VRLNTLNKSITTKRNSLTESKRHVHDGKHFFTTPHQQ 118
>ADA21_MOUSE (Q9JI76) ADAM 21 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 21) (ADAM 31) Length = 729 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = -3 Query: 140 CRVHPVFICSFSLCCK 93 C + P CSF LCCK Sbjct: 442 CTLRPAAACSFGLCCK 457
>GLNA1_RHIME (Q59747) Glutamine synthetase 1 (EC 6.3.1.2) (Glutamine synthetase| I) (Glutamate--ammonia ligase I) (GSI) Length = 469 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = -3 Query: 347 GSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRFKMEEVAKAMAVP 198 GSL E S D+K A D D I+SF++L KM+EV + P Sbjct: 413 GSL-REALESLDKDRKFLTAGGVFDDDQIDSFIEL---KMQEVMRFEMTP 458
>RDRP_ACLSA (P54891) RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase)| (216.5 kDa protein) (ORF1) Length = 1885 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 10/48 (20%) Frame = -3 Query: 338 SHEQWRSFHNDKKTSEARNFLD----------GDLIESFLDLNRFKME 225 +HE WR TSE R+F+ GDL + +LN K++ Sbjct: 1007 THEGWRMIKGINSTSEMRSFMSMIKGKSEETRGDLFDRVQELNFMKVK 1054
>2B32_HUMAN (P01913) HLA class II histocompatibility antigen, DRB3-2 beta chain| precursor (MHC class I antigen DRB3*2) Length = 266 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 Query: 36 EKRNVATNTCRGSFSGRQRFTTQRKRTNKNRMYTARRYLVQSRQLL 173 +KR N CR ++ + FT QR+ + +Y A+ +Q LL Sbjct: 99 QKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLL 144
>2B11_HUMAN (P04229) HLA class II histocompatibility antigen, DRB1-1 beta chain| precursor (MHC class I antigen DRB1*1) (DR-1) (DR1) Length = 266 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +3 Query: 24 KSKTEKRNVATNT-CRGSFSGRQRFTTQRKRTNKNRMYTARRYLVQSRQLL 173 K E+R A +T CR ++ + FT QR+ K +Y ++ +Q LL Sbjct: 94 KDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLL 144
>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 20) Length = 726 Score = 27.3 bits (59), Expect = 9.2 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -3 Query: 140 CRVHPVFICSFSLCCK 93 C +HP C+F +CCK Sbjct: 439 CTLHPGAACAFGICCK 454 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,360,529 Number of Sequences: 219361 Number of extensions: 758143 Number of successful extensions: 3320 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 3108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3312 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
