Clone Information

BLAST Search Result

Clone Name	rbastl18e02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC130728.2\| Oryza sativa (japonica cultivar-group) chromosome...	238	1e-59
2	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	238	1e-59
3	dbj\|AK104782.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	238	1e-59
4	dbj\|AK065508.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	238	1e-59
5	dbj\|AK059736.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	238	1e-59
6	dbj\|AB037144.1\| Oryza sativa (japonica cultivar-group) OsUV-DDB ...	238	1e-59
7	ref\|XM_476019.1\| Oryza sativa (japonica cultivar-group), predic...	234	2e-58
8	gb\|BT024148.1\| Zea mays clone EL01N0440D08 mRNA sequence	188	9e-45
9	gb\|AY104362.1\| Zea mays PCO060159 mRNA sequence	109	7e-21
10	ref\|NM_113216.2\| Arabidopsis thaliana ETR2 (ETHYLENE RESPONSE 2)...	44	0.32
11	dbj\|AB025608.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	44	0.32
12	gb\|AF047975.1\|AF047975 Arabidopsis thaliana putative ethylene re...	44	0.32
13	ref\|XM_785030.1\| PREDICTED: Strongylocentrotus purpuratus hypoth...	42	1.3
14	emb\|AJ293976.1\|SCA293976 Struthio camelus partial r35 gene for o...	42	1.3
15	ref\|NM_118228.2\| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING...	40	5.1
16	ref\|XM_482858.1\| Oryza sativa (japonica cultivar-group), mRNA	40	5.1
17	ref\|XM_594145.2\| PREDICTED: Bos taurus similar to Neural cell ad...	40	5.1
18	ref\|NM_021099.2\| Mus musculus kit oncogene (Kit), mRNA	40	5.1
19	ref\|XM_956852.1\| Neurospora crassa OR74A hypothetical protein (N...	40	5.1
20	ref\|XM_326439.1\| Neurospora crassa OR74A hypothetical protein (N...	40	5.1
21	ref\|XM_615696.2\| PREDICTED: Bos taurus similar to Tax1 (human T-...	40	5.1
22	gb\|CP000352.1\| Ralstonia metallidurans CH34, complete genome	40	5.1
23	ref\|XM_547518.2\| PREDICTED: Canis familiaris similar to Apoptosi...	40	5.1
24	emb\|X65998.1\|MMCKITPRO M.musculus genomic DNA of c-kit promoter ...	40	5.1
25	gb\|AC129091.19\| Medicago truncatula clone mth2-15j7, complete se...	40	5.1
26	gb\|BC105389.1\| Bos taurus similar to Tax1 (human T-cell leukemia...	40	5.1
27	emb\|AL353573.10\| Human DNA sequence from clone RP11-550E18 on ch...	40	5.1
28	emb\|AL050331.11\|HSDJ486I3 Human DNA sequence from clone RP3-486I...	40	5.1
29	emb\|Y00864.1\|MMCKIT Mouse c-kit mRNA	40	5.1
30	emb\|BX883051.1\| Rattus norvegicus chromosome 20, major histocomp...	40	5.1
31	gb\|AC153499.7\| Mus musculus 10 BAC RP23-478J15 (Roswell Park Can...	40	5.1
32	emb\|AL161554.2\|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ...	40	5.1
33	emb\|AL021960.2\|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC...	40	5.1
34	gb\|DP000057.1\| Dasypus novemcinctus target 117 genomic scaffold	40	5.1
35	gb\|AF356350.1\|AF356350 Mus musculus c-KIT gene, promoter region ...	40	5.1
36	dbj\|AK220648.1\| Arabidopsis thaliana mRNA for UV-damaged DNA-bin...	40	5.1
37	gb\|AC149135.2\| Medicago truncatula chromosome 2 BAC clone mth2-3...	40	5.1
38	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.1
39	emb\|BX004967.9\| Zebrafish DNA sequence from clone CH211-139I20 i...	40	5.1
40	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	40	5.1
41	dbj\|AP006461.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.1
42	dbj\|AP004585.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.1
43	emb\|CR759879.17\| Zebrafish DNA sequence from clone DKEYP-117B8 i...	40	5.1
44	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	40	5.1
45	gb\|AE017221.1\| Thermus thermophilus HB27, complete genome	40	5.1
46	dbj\|AP007294.1\| Lotus japonicus genomic DNA, clone:LjT42E17, TM0...	40	5.1

>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score =  238 bits (120), Expect = 1e-59
 Identities = 198/224 (88%)
 Strand = Plus / Minus

                                                                         
Query: 148   acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 207
             |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 77982 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 77923

                                                                         
Query: 208   atcgccttggccacctcctccatcttgaacctgttgaggtcgaggaatgactcaatcagg 267
             ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 77922 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 77863

                                                                         
Query: 268   tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 327
             || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 77862 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 77803

                                                         
Query: 328   tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 371
             ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 77802 tgctcatggctcaggttccccacgccctttatgaacttcaccag 77759

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  238 bits (120), Expect = 1e-59
 Identities = 198/224 (88%)
 Strand = Plus / Minus

                                                                            
Query: 148      acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 207
                |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 29299325 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 29299266

                                                                            
Query: 208      atcgccttggccacctcctccatcttgaacctgttgaggtcgaggaatgactcaatcagg 267
                ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 29299265 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 29299206

                                                                            
Query: 268      tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 327
                || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 29299205 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 29299146

                                                            
Query: 328      tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 371
                ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 29299145 tgctcatggctcaggttccccacgccctttatgaacttcaccag 29299102

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>dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C09, full
           insert sequence
          Length = 1135

 Score =  238 bits (120), Expect = 1e-59
 Identities = 198/224 (88%)
 Strand = Plus / Minus

                                                                       
Query: 148 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 207
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 208 atcgccttggccacctcctccatcttgaacctgttgaggtcgaggaatgactcaatcagg 267
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                                                       
Query: 268 tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 327
           || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555

                                                       
Query: 328 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 371
           ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccag 511

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>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full
            insert sequence
          Length = 3792

 Score =  238 bits (120), Expect = 1e-59
 Identities = 198/224 (88%)
 Strand = Plus / Minus

                                                                        
Query: 148  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 207
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 208  atcgccttggccacctcctccatcttgaacctgttgaggtcgaggaatgactcaatcagg 267
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                                                        
Query: 268  tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 327
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212

                                                        
Query: 328  tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 371
            ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccag 3168

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>dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D04, full
           insert sequence
          Length = 1135

 Score =  238 bits (120), Expect = 1e-59
 Identities = 198/224 (88%)
 Strand = Plus / Minus

                                                                       
Query: 148 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 207
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 208 atcgccttggccacctcctccatcttgaacctgttgaggtcgaggaatgactcaatcagg 267
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                                                       
Query: 268 tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 327
           || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555

                                                       
Query: 328 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 371
           ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccag 511

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>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged
            DNA binding protein, complete cds
          Length = 3658

 Score =  238 bits (120), Expect = 1e-59
 Identities = 198/224 (88%)
 Strand = Plus / Minus

                                                                        
Query: 148  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 207
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 208  atcgccttggccacctcctccatcttgaacctgttgaggtcgaggaatgactcaatcagg 267
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                                                        
Query: 268  tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 327
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212

                                                        
Query: 328  tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 371
            ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccag 3168

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>ref|XM_476019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score =  234 bits (118), Expect = 2e-58
 Identities = 196/222 (88%)
 Strand = Plus / Minus

                                                                        
Query: 150  ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 209
            |||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||||
Sbjct: 3273 ctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggacccccat 3214

                                                                        
Query: 210  cgccttggccacctcctccatcttgaacctgttgaggtcgaggaatgactcaatcaggtc 269
              |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||||
Sbjct: 3213 acccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcaggtc 3154

                                                                        
Query: 270  gccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactg 329
             || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3153 accatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccattg 3094

                                                      
Query: 330  ctcgtggctcaggctgcccacgcccttgatgaacttgaccag 371
            ||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 3093 ctcatggctcaggttccccacgccctttatgaacttcaccag 3052

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>gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence
          Length = 1582

 Score =  188 bits (95), Expect = 9e-45
 Identities = 185/215 (86%)
 Strand = Plus / Plus

                                                                       
Query: 160 ctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccatcgccttggcc 219
           ||||||||||| ||||||| ||||||||||||||| || |||||  |||||||||||| |
Sbjct: 246 ctcgtcagctcttccaccctcttggacagctcctccacggggacgcccatcgccttggac 305

                                                                       
Query: 220 acctcctccatcttgaacctgttgaggtcgaggaatgactcaatcaggtcgccgtccagg 279
           |||||||||||||||  || | | ||||| ||||| ||||| |||||||| ||||| |||
Sbjct: 306 acctcctccatcttgctccggctaaggtcaaggaaagactcgatcaggtcaccgtcgagg 365

                                                                       
Query: 280 aagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactgctcgtggctc 339
           ||||| || ||||||| ||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 366 aagttccgagcctccgccgtcttcttgtcgttatggaaggaccgccattgctcgtggctc 425

                                              
Query: 340 aggctgcccacgcccttgatgaacttgaccagggt 374
           ||| | || |||||||| ||| |||| || |||||
Sbjct: 426 aggtttccgacgccctttatgtacttcacaagggt 460

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>gb|AY104362.1| Zea mays PCO060159 mRNA sequence
          Length = 1296

 Score =  109 bits (55), Expect = 7e-21
 Identities = 157/191 (82%)
 Strand = Plus / Minus

                                                                       
Query: 150 ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 209
           |||||| || ||||||||||| |||||   ||||||||| ||||| || |  ||  ||||
Sbjct: 860 ctagtgaagcctcgtcagctcttccacaatcttggacagatcctccaccgaaacgcccat 801

                                                                       
Query: 210 cgccttggccacctcctccatcttgaacctgttgaggtcgaggaatgactcaatcaggtc 269
            ||||||| |||| |||||||||||  || | | ||||| ||||| ||||| ||||||||
Sbjct: 800 agccttggacaccacctccatcttgctccggctaaggtcaaggaacgactcgatcaggtc 741

                                                                       
Query: 270 gccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactg 329
            || || |||||||| || |||||||  |||||||||||||| |||||||||||||| ||
Sbjct: 740 accatcaaggaagttccgtgcctccgctgtcttcttgtcgttatggaacgaccgccattg 681

                      
Query: 330 ctcgtggctca 340
           ||| |||||||
Sbjct: 680 ctcatggctca 670

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>ref|NM_113216.2| Arabidopsis thaliana ETR2 (ETHYLENE RESPONSE 2); receptor AT3G23150
            (ETR2) mRNA, complete cds
          Length = 2893

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 106  gaaaacgaacaaataaaaacaggatgtaca 135
            ||||| ||||||| ||||||||||||||||
Sbjct: 2865 gaaaaagaacaaaaaaaaacaggatgtaca 2836

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>dbj|AB025608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15
          Length = 83689

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 106   gaaaacgaacaaataaaaacaggatgtaca 135
             ||||| ||||||| ||||||||||||||||
Sbjct: 16468 gaaaaagaacaaaaaaaaacaggatgtaca 16439

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>gb|AF047975.1|AF047975 Arabidopsis thaliana putative ethylene receptor (ETR2) gene, complete
            cds
          Length = 7403

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 106  gaaaacgaacaaataaaaacaggatgtaca 135
            ||||| ||||||| ||||||||||||||||
Sbjct: 6073 gaaaaagaacaaaaaaaaacaggatgtaca 6044

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>ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC585193 (LOC585193), mRNA
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 210 cgccttggccacctcctccat 230
           |||||||||||||||||||||
Sbjct: 264 cgccttggccacctcctccat 244

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>emb|AJ293976.1|SCA293976 Struthio camelus partial r35 gene for orphan G protein-coupled
           receptor R35, exon 1
          Length = 805

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 113 aacaaataaaaacaggatgta 133
           |||||||||||||||||||||
Sbjct: 421 aacaaataaaaacaggatgta 401

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>ref|NM_118228.2| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING PROTEIN 1 B)
            AT4G21100 (DDB1B) mRNA, complete cds
          Length = 3390

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 307  tcgttgtggaacgaccgccactgctcgtggct 338
            ||||||| |||||| | |||||||||||||||
Sbjct: 3110 tcgttgttgaacgatctccactgctcgtggct 3079

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>ref|XM_482858.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  cttggacagctcctcgacag 199
            ||||||||||||||||||||
Sbjct: 1413 cttggacagctcctcgacag 1394

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>ref|XM_594145.2| PREDICTED: Bos taurus similar to Neural cell adhesion molecule L1
           precursor (N-CAM L1) (CD171 antigen) (LOC516017), mRNA
          Length = 4867

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 aacctgttgaggtcgaggaa 254
           ||||||||||||||||||||
Sbjct: 431 aacctgttgaggtcgaggaa 450

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>ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA
          Length = 5132

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  cgccatcgccttggccacct 223
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346

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>ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  ccttggccacctcctccatc 231
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529

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>ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  ccttggccacctcctccatc 231
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529

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>ref|XM_615696.2| PREDICTED: Bos taurus similar to Tax1 (human T-cell leukemia virus
            type I) binding protein 1 (LOC535589), mRNA
          Length = 4144

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    ttaaagttacactcttatca 23
            ||||||||||||||||||||
Sbjct: 3302 ttaaagttacactcttatca 3283

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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 207     catcgccttggccacctcctccat 230
               |||||||||||||||||| |||||
Sbjct: 2717222 catcgccttggccacctcttccat 2717245

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>ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosis stimulating of p53
            protein 2 (Tumor suppressor p53-binding protein 2)
            (p53-binding protein 2) (53BP2) (Bcl2-binding protein)
            (Bbp) (LOC490397), mRNA
          Length = 3792

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 158  gtctcgtcagctcctccacc 177
            ||||||||||||||||||||
Sbjct: 1102 gtctcgtcagctcctccacc 1083

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>emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter region
          Length = 1161

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 204 cgccatcgccttggccacct 223
           ||||||||||||||||||||
Sbjct: 30  cgccatcgccttggccacct 11

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>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaagttacactcttatcaaa 25
             ||||||||||||||||||||
Sbjct: 92380 aaagttacactcttatcaaa 92361

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>gb|BC105389.1| Bos taurus similar to Tax1 (human T-cell leukemia virus type I)
            binding protein 1, mRNA (cDNA clone MGC:128202
            IMAGE:7988397), complete cds
          Length = 3485

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    ttaaagttacactcttatca 23
            ||||||||||||||||||||
Sbjct: 3429 ttaaagttacactcttatca 3410

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>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 93    tttacaacacagcgaaaacgaacaaata 120
             |||||| ||||| |||||||||||||||
Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177

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>emb|AL050331.11|HSDJ486I3 Human DNA sequence from clone RP3-486I3 on chromosome 6q22.1-22.3
             Contains the 3' end of a novel gene, a novel gene, the
             gene for KIAA0721 (NAP (Nucleosome Assembly Protein)
             domain containing protein), a novel gene, an RPS5 (40S
             Ribosomal Protein S5) pseudogene, the TSPYL gene for
             TSPY-like (testis specific protein, Y-linked like), the 5'
             end of a novel gene, the 5' end of the SART gene for
             squamous cell carcinoma antigen recognised by T cell and
             two CpG islands, complete sequence
          Length = 118327

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   aaaacgaacaaataaaaaca 126
             ||||||||||||||||||||
Sbjct: 47091 aaaacgaacaaataaaaaca 47072

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>emb|Y00864.1|MMCKIT Mouse c-kit mRNA
          Length = 5098

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  cgccatcgccttggccacct 223
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346

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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 10/11
          Length = 348946

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ttaaagttacactcttatca 23
              ||||||||||||||||||||
Sbjct: 204349 ttaaagttacactcttatca 204330

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>gb|AC153499.7| Mus musculus 10 BAC RP23-478J15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207222

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gaaaacgaacaaataaaaac 125
             ||||||||||||||||||||
Sbjct: 86646 gaaaacgaacaaataaaaac 86627

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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 307   tcgttgtggaacgaccgccactgctcgtggct 338
             ||||||| |||||| | |||||||||||||||
Sbjct: 70651 tcgttgttgaacgatctccactgctcgtggct 70682

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>emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7J7 (ESSA project)
          Length = 91387

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 307   tcgttgtggaacgaccgccactgctcgtggct 338
             ||||||| |||||| | |||||||||||||||
Sbjct: 12448 tcgttgttgaacgatctccactgctcgtggct 12479

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>gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold
          Length = 444202

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   acctcctccatcttgaacct 239
             ||||||||||||||||||||
Sbjct: 46781 acctcctccatcttgaacct 46762

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>gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region and partial cds
          Length = 1210

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 204 cgccatcgccttggccacct 223
           ||||||||||||||||||||
Sbjct: 75  cgccatcgccttggccacct 56

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>dbj|AK220648.1| Arabidopsis thaliana mRNA for UV-damaged DNA-binding protein-like,
            complete cds, clone: RAFL21-64-B09
          Length = 3586

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 307  tcgttgtggaacgaccgccactgctcgtggct 338
            ||||||| |||||| | |||||||||||||||
Sbjct: 3264 tcgttgttgaacgatctccactgctcgtggct 3233

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>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     aaagttacactcttatcaaa 25
             ||||||||||||||||||||
Sbjct: 94991 aaagttacactcttatcaaa 95010

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 180      cttggacagctcctcgacag 199
                ||||||||||||||||||||
Sbjct: 22995444 cttggacagctcctcgacag 22995425

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>emb|BX004967.9| Zebrafish DNA sequence from clone CH211-139I20 in linkage group 7,
             complete sequence
          Length = 184868

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   ttgaacctgttgaggtcgag 251
             ||||||||||||||||||||
Sbjct: 51809 ttgaacctgttgaggtcgag 51790

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    cgccttggccacctcctcca 229
              ||||||||||||||||||||
Sbjct: 290449 cgccttggccacctcctcca 290468



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ggccacctcctccatcttga 235
              ||||||||||||||||||||
Sbjct: 162782 ggccacctcctccatcttga 162763

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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    cttggacagctcctcgacag 199
              ||||||||||||||||||||
Sbjct: 169282 cttggacagctcctcgacag 169263

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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   cttggacagctcctcgacag 199
             ||||||||||||||||||||
Sbjct: 55172 cttggacagctcctcgacag 55153

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>emb|CR759879.17| Zebrafish DNA sequence from clone DKEYP-117B8 in linkage group 5,
             complete sequence
          Length = 110254

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   tcctccatcttgaacctgtt 242
             ||||||||||||||||||||
Sbjct: 78325 tcctccatcttgaacctgtt 78306

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     ccgccatcgccttggccacc 222
               ||||||||||||||||||||
Sbjct: 1957900 ccgccatcgccttggccacc 1957919

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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 216     ggccacctcctccatcttga 235
               ||||||||||||||||||||
Sbjct: 1727018 ggccacctcctccatcttga 1727037



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 210     cgccttggccacctcctcca 229
               ||||||||||||||||||||
Sbjct: 1595005 cgccttggccacctcctcca 1594986

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>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tcttatcaaagtcgaaaaca 35
              ||||||||||||||||||||
Sbjct: 118575 tcttatcaaagtcgaaaaca 118594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,142,893
Number of Sequences: 3902068
Number of extensions: 3142893
Number of successful extensions: 61626
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61320
Number of HSP's gapped (non-prelim): 298
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result