>RRMJ_BARHE (Q6G4Z3) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 247

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 231 GGKVIVLGMGPGGGAQVSG-FMGSA--LPSRVLVD*AHKVLLPRGVL 100
           G K+I LG  PGG  QVSG  +GS+   PS V +D  H   LP  V+
Sbjct: 77  GQKIIDLGAAPGGWCQVSGCIVGSSDEKPSVVGIDYLHVDPLPGVVM 123

>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3) (Protein G3)
          Length = 1132

 Score = 25.0 bits (53), Expect(2) = 1.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 140 TRTLLGRAEPMNPDTWAPPPGP 205
           T T  G   P  P+  APPPGP
Sbjct: 386 TMTGNGTRPPPTPNAEAPPPGP 407



 Score = 23.5 bits (49), Expect(2) = 1.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 188 APPPGPIPSTITFPP 232
           APPPGP P   T  P
Sbjct: 427 APPPGPAPPPATSHP 441

>CLUS_MOUSE (Q06890) Clusterin precursor (Sulfated glycoprotein 2) (SGP-2)|
           (Clustrin) (Apolipoprotein J) (Apo-J) [Contains:
           Clusterin beta chain; Clusterin alpha chain]
          Length = 448

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/86 (19%), Positives = 34/86 (39%)
 Frame = +1

Query: 109 ARKQNFVSSVYKDPAWKGRAHEP*HLGPAPWPHSQHYYLPAIFHQXXXXXXFKHLHRPPP 288
           AR    + ++++D  +    H+P +  P  +PH + ++L              H   P  
Sbjct: 180 ARASGIIDTLFQDRFFARELHDPHYFSPIGFPHKRPHFLYPKSRLVRSLMSPSHYGPPSF 239

Query: 289 QHLV*KVLRSRGQSLGRLVVQVHLPA 366
            ++         Q+   + VQ+H PA
Sbjct: 240 HNMFQPFFEMIHQAQQAMDVQLHSPA 265

>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 167 PMNPDTWAPPPGPIPSTITFPP 232
           P+ P T  PPP P+P     PP
Sbjct: 604 PLPPGTCIPPPPPLPGGACIPP 625

>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB)
          Length = 199

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 131 AQSTRTLLGRAEPMNPDTWAPPPGPIPSTITFPP 232
           AQ     +GR  P  P   APPPG IP  +   P
Sbjct: 136 AQQHMAPMGRGVPRAPMMGAPPPGMIPGGMPSMP 169

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 167 PMNPDTWAPPPGPIPSTITFPP 232
           PM P   +PPP P P T   PP
Sbjct: 285 PMPPSPPSPPPSPAPPTPPTPP 306

>CAC1F_HUMAN (O60840) Voltage-dependent L-type calcium channel alpha-1F subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.4)
          Length = 1966

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 203  GQGAGP-RCQGSWARPFQAGSL 141
            G+ +GP R QGSWA P Q G L
Sbjct: 1815 GRNSGPNRAQGSWATPPQRGRL 1836

>MEI1_CAEEL (P34808) Meiotic spindle formation protein mei-1 (EC 3.6.4.3)|
           (Katanin ATPase-containing subunit)
          Length = 472

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 167 PMNPDTWAPPPGPIPSTITF 226
           P +PD W+ P  P+PS+  F
Sbjct: 96  PADPDVWSKPSPPLPSSSKF 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,894,427
Number of Sequences: 219361
Number of extensions: 660181
Number of successful extensions: 2620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2611
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)