ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
2emb|AL662966.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 56 8e-05
3ref|XM_471683.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
4gb|AC026954.14| Homo sapiens chromosome 17, clone RP11-542C16, c... 48 0.021
5gb|AC003688.1|AC003688 Homo sapiens chromosome 17, clone hRPC.4_... 48 0.021
6ref|XM_528652.1| PREDICTED: Pan troglodytes similar to UDP-GalNA... 44 0.32
7gb|CP000088.1| Thermobifida fusca YX, complete genome 44 0.32
8ref|XM_512312.1| PREDICTED: Pan troglodytes similar to Putative ... 42 1.3
9gb|DQ217047.1| Taeniopygia guttata clone 0058P0044G11 spliceosom... 42 1.3
10gb|DQ217046.1| Taeniopygia guttata clone 0063P0026F04 spliceosom... 42 1.3
11gb|DQ217045.1| Taeniopygia guttata clone 0058P0008H07 spliceosom... 42 1.3
12gb|DQ217044.1| Taeniopygia guttata clone 0058P0034G04 spliceosom... 42 1.3
13gb|DQ217043.1| Taeniopygia guttata clone 0063P0028C05 spliceosom... 42 1.3
14gb|DQ217042.1| Taeniopygia guttata clone 0061P0017B02 spliceosom... 42 1.3
15ref|NM_184593.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.3
17gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 42 1.3
18gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.3
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
20gb|AC007880.2| Homo sapiens BAC clone RP11-323F11 from 2, comple... 42 1.3
21dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.3
22gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.3
23dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.3
24gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 5.0
25gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, com... 40 5.0
26gb|AC124327.9| Mus musculus chromosome 8, clone RP24-490I13, com... 40 5.0
27ref|XM_618161.2| PREDICTED: Bos taurus similar to serine palmito... 40 5.0
28emb|CR668140.2|CNS0FEIA Tetraodon nigroviridis full-length cDNA 40 5.0
29emb|CR666527.2|CNS0FD9H Tetraodon nigroviridis full-length cDNA 40 5.0
30emb|CR657666.2|CNS0F6FC Tetraodon nigroviridis full-length cDNA 40 5.0
31emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12... 40 5.0
32gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 5.0
33emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 5.0
34gb|AC104606.6| Drosophila melanogaster X BAC RP98-26L11 (Roswell... 40 5.0
35ref|NM_078516.2| Drosophila melanogaster Checkpoint suppressor h... 40 5.0
36dbj|AK141398.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 40 5.0
37dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.0
38dbj|AB107666.1| Cynops pyrrhogaster Per 1 mRNA for period 1, com... 40 5.0
39gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 ... 40 5.0
40gb|AF005368.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence 40 5.0
41gb|AF005367.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence 40 5.0
42gb|AF005366.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence 40 5.0
43gb|AF005365.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence 40 5.0
44gb|AF005364.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence 40 5.0
45gb|AF005363.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence 40 5.0
46gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, par... 40 5.0 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 131      gctcagtctacaaggaccctgcttggaagggccgagcccatgaaccct 178
                |||||||| ||| ||||||| || |||||| |||||||||||||||||
Sbjct: 13271382 gctcagtccacatggaccctactcggaaggaccgagcccatgaaccct 13271429



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 251      gccgccgcaggttcaaacacctccaccgcccacc 284
                |||||||| ||||||||||||||| || ||||||
Sbjct: 13271502 gccgccgccggttcaaacacctccgccacccacc 13271535
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>emb|AL662966.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035B13,
             complete sequence
          Length = 145234

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 131   gctcagtctacaaggaccctgcttggaagggccgagcccatgaaccct 178
             |||||||| ||| ||||||| || |||||| |||||||||||||||||
Sbjct: 43481 gctcagtccacatggaccctactcggaaggaccgagcccatgaaccct 43528



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 251   gccgccgcaggttcaaacacctccaccgcccacc 284
             |||||||| ||||||||||||||| || ||||||
Sbjct: 43601 gccgccgccggttcaaacacctccgccacccacc 43634
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>ref|XM_471683.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3195

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 133  tcagtctacaaggaccctgcttggaagggccgagcccatgaaccct 178
            |||||| ||| ||||||| || |||||| |||||||||||||||||
Sbjct: 3195 tcagtccacatggaccctactcggaaggaccgagcccatgaaccct 3150



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 251  gccgccgcaggttcaaacacctccaccgcccacc 284
            |||||||| ||||||||||||||| || ||||||
Sbjct: 3077 gccgccgccggttcaaacacctccgccacccacc 3044
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>gb|AC026954.14| Homo sapiens chromosome 17, clone RP11-542C16, complete sequence
          Length = 101029

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 180   acacctgggccccgccccctggcc 203
             ||||||||||||||||||||||||
Sbjct: 16253 acacctgggccccgccccctggcc 16276
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>gb|AC003688.1|AC003688 Homo sapiens chromosome 17, clone hRPC.4_G_17, complete sequence
          Length = 98117

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 180   acacctgggccccgccccctggcc 203
             ||||||||||||||||||||||||
Sbjct: 97176 acacctgggccccgccccctggcc 97199
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>ref|XM_528652.1| PREDICTED: Pan troglodytes similar to UDP-GalNAc: polypeptide
            N-acetylgalactosaminyltransferase (LOC473282), mRNA
          Length = 4062

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 274  caccgcccacctccacagcacc 295
            ||||||||||||||||||||||
Sbjct: 3367 caccgcccacctccacagcacc 3346
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 330     cctcggccgcctcgtcgtccag 351
               ||||||||||||||||||||||
Sbjct: 2903603 cctcggccgcctcgtcgtccag 2903582
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>ref|XM_512312.1| PREDICTED: Pan troglodytes similar to Putative ATP-dependent Clp
           protease proteolytic subunit, mitochondrial precursor
           (Endopeptidase Clp) (LOC455637), mRNA
          Length = 1454

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 240 ccagcgccgcggccgccgcag 260
           |||||||||||||||||||||
Sbjct: 207 ccagcgccgcggccgccgcag 227
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>gb|DQ217047.1| Taeniopygia guttata clone 0058P0044G11 spliceosome associated
           protein-like mRNA, complete sequence
          Length = 1023

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 tccaccagcgccgcggccgcc 256
           |||||||||||||||||||||
Sbjct: 141 tccaccagcgccgcggccgcc 121
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>gb|DQ217046.1| Taeniopygia guttata clone 0063P0026F04 spliceosome associated
           protein-like mRNA, complete sequence
          Length = 1054

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 tccaccagcgccgcggccgcc 256
           |||||||||||||||||||||
Sbjct: 135 tccaccagcgccgcggccgcc 115
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>gb|DQ217045.1| Taeniopygia guttata clone 0058P0008H07 spliceosome associated
           protein-like mRNA, complete sequence
          Length = 1023

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 tccaccagcgccgcggccgcc 256
           |||||||||||||||||||||
Sbjct: 141 tccaccagcgccgcggccgcc 121
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>gb|DQ217044.1| Taeniopygia guttata clone 0058P0034G04 spliceosome associated
           protein-like mRNA, complete sequence
          Length = 1014

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 tccaccagcgccgcggccgcc 256
           |||||||||||||||||||||
Sbjct: 133 tccaccagcgccgcggccgcc 113
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>gb|DQ217043.1| Taeniopygia guttata clone 0063P0028C05 spliceosome associated
           protein-like mRNA, complete sequence
          Length = 1008

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 tccaccagcgccgcggccgcc 256
           |||||||||||||||||||||
Sbjct: 127 tccaccagcgccgcggccgcc 107
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>gb|DQ217042.1| Taeniopygia guttata clone 0061P0017B02 spliceosome associated
           protein-like mRNA, complete sequence
          Length = 1009

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 tccaccagcgccgcggccgcc 256
           |||||||||||||||||||||
Sbjct: 127 tccaccagcgccgcggccgcc 107
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>ref|NM_184593.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1224

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 241 cagcgccgcggccgccgcagg 261
           |||||||||||||||||||||
Sbjct: 763 cagcgccgcggccgccgcagg 783
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 241      cagcgccgcggccgccgcagg 261
                |||||||||||||||||||||
Sbjct: 14377014 cagcgccgcggccgccgcagg 14376994
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>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
              sequence
          Length = 158714

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 241    cagcgccgcggccgccgcagg 261
              |||||||||||||||||||||
Sbjct: 126243 cagcgccgcggccgccgcagg 126223
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 233    ttttccaccagcgccgcggcc 253
              |||||||||||||||||||||
Sbjct: 973463 ttttccaccagcgccgcggcc 973483
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 241      cagcgccgcggccgccgcagg 261
                |||||||||||||||||||||
Sbjct: 14371989 cagcgccgcggccgccgcagg 14371969
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>gb|AC007880.2| Homo sapiens BAC clone RP11-323F11 from 2, complete sequence
          Length = 122223

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 268   cacctccaccgcccacctcca 288
             |||||||||||||||||||||
Sbjct: 32467 cacctccaccgcccacctcca 32487
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 236     tccaccagcgccgcggccgcc 256
               |||||||||||||||||||||
Sbjct: 1976019 tccaccagcgccgcggccgcc 1976039
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 331     ctcggccgcctcgtcgtccag 351
               |||||||||||||||||||||
Sbjct: 3031499 ctcggccgcctcgtcgtccag 3031519
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 236     tccaccagcgccgcggccgcc 256
               |||||||||||||||||||||
Sbjct: 1968340 tccaccagcgccgcggccgcc 1968360
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    ttaccttcccgccattttcc 238
              ||||||||||||||||||||
Sbjct: 448853 ttaccttcccgccattttcc 448834
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>gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, complete sequence
          Length = 147125

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    gcgaggaagcaaaactttgt 128
              ||||||||||||||||||||
Sbjct: 113754 gcgaggaagcaaaactttgt 113773
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>gb|AC124327.9| Mus musculus chromosome 8, clone RP24-490I13, complete sequence
          Length = 141781

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  gcccacctccacagcacctt 297
            ||||||||||||||||||||
Sbjct: 4657 gcccacctccacagcacctt 4676
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>ref|XM_618161.2| PREDICTED: Bos taurus similar to serine palmitoyltransferase, long
           chain base subunit 2 (LOC537972), mRNA
          Length = 2387

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 cagcgccgcggccgccgcag 260
           ||||||||||||||||||||
Sbjct: 444 cagcgccgcggccgccgcag 463
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>emb|CR668140.2|CNS0FEIA Tetraodon nigroviridis full-length cDNA
          Length = 1344

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 ttccaccagcgccgcggccg 254
           ||||||||||||||||||||
Sbjct: 162 ttccaccagcgccgcggccg 143
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>emb|CR666527.2|CNS0FD9H Tetraodon nigroviridis full-length cDNA
          Length = 1447

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 ttccaccagcgccgcggccg 254
           ||||||||||||||||||||
Sbjct: 158 ttccaccagcgccgcggccg 139
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>emb|CR657666.2|CNS0F6FC Tetraodon nigroviridis full-length cDNA
          Length = 1357

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 ttccaccagcgccgcggccg 254
           ||||||||||||||||||||
Sbjct: 181 ttccaccagcgccgcggccg 162
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>emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12 on chromosome 1p34.1-34.3
              Contains a CpG island, complete sequence
          Length = 159281

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    cattcccagcactattacct 224
              ||||||||||||||||||||
Sbjct: 102479 cattcccagcactattacct 102460
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 227     ccgccattttccaccagcgc 246
               ||||||||||||||||||||
Sbjct: 2269368 ccgccattttccaccagcgc 2269349
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 342    cgtcgtccaggtgcacctcccggccgagcgcc 373
              ||||||||| || ||||||| |||||||||||
Sbjct: 259995 cgtcgtccacgtccacctccaggccgagcgcc 260026
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>gb|AC104606.6| Drosophila melanogaster X BAC RP98-26L11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 183105

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     caacaaattgagctaagtag 46
              ||||||||||||||||||||
Sbjct: 120230 caacaaattgagctaagtag 120249
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>ref|NM_078516.2| Drosophila melanogaster Checkpoint suppressor homologue CG12690-RA
            (CHES-1-like), mRNA
          Length = 6483

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   caacaaattgagctaagtag 46
            ||||||||||||||||||||
Sbjct: 4762 caacaaattgagctaagtag 4781
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>dbj|AK141398.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530001D10
            product:unclassifiable, full insert sequence
          Length = 2306

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  gcgaggaagcaaaactttgt 128
            ||||||||||||||||||||
Sbjct: 1681 gcgaggaagcaaaactttgt 1700
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 238     caccagcgccgcggccgccg 257
               ||||||||||||||||||||
Sbjct: 1841829 caccagcgccgcggccgccg 1841810
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>dbj|AB107666.1| Cynops pyrrhogaster Per 1 mRNA for period 1, complete cds
          Length = 5434

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  cgcggccgccgcaggttcaa 266
            ||||||||||||||||||||
Sbjct: 4348 cgcggccgccgcaggttcaa 4367
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>gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 of 74 of the complete
              sequence
          Length = 285949

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     caacaaattgagctaagtag 46
              ||||||||||||||||||||
Sbjct: 171618 caacaaattgagctaagtag 171599
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>gb|AF005368.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence
          Length = 1113

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ccccgccccctggccccatt 208
           ||||||||||||||||||||
Sbjct: 902 ccccgccccctggccccatt 921
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>gb|AF005367.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence
          Length = 1114

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ccccgccccctggccccatt 208
           ||||||||||||||||||||
Sbjct: 902 ccccgccccctggccccatt 921
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>gb|AF005366.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence
          Length = 1115

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ccccgccccctggccccatt 208
           ||||||||||||||||||||
Sbjct: 904 ccccgccccctggccccatt 923
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>gb|AF005365.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence
          Length = 1116

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ccccgccccctggccccatt 208
           ||||||||||||||||||||
Sbjct: 904 ccccgccccctggccccatt 923
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>gb|AF005364.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ccccgccccctggccccatt 208
           ||||||||||||||||||||
Sbjct: 906 ccccgccccctggccccatt 925
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>gb|AF005363.1| Alcelaphine herpesvirus 1 H-DNA, complete sequence
          Length = 1118

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ccccgccccctggccccatt 208
           ||||||||||||||||||||
Sbjct: 906 ccccgccccctggccccatt 925
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>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome
          Length = 189370

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   accagcgccgcggccgccgc 258
             ||||||||||||||||||||
Sbjct: 80230 accagcgccgcggccgccgc 80249


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,704,930
Number of Sequences: 3902068
Number of extensions: 2704930
Number of successful extensions: 65236
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64446
Number of HSP's gapped (non-prelim): 790
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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