ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ENV_HV1Z3 (P12491) Envelope polyprotein GP160 precursor [Contain... 28 6.0
2DMXL1_MOUSE (Q6PNC0) Protein DmX-like 1 (X-like 1 protein) 28 6.0
3WGRTX_GRASP (P60590) Omega-grammotoxin SIA (Omega-GrTx SIA) (Ome... 28 7.8

>ENV_HV1Z3 (P12491) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120)]
          Length = 460

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +2

Query: 98  ITCGC----NNLNNKTHESDFVNITPKISHIYKDQE*AFHSKYHKFTV---NETTDSTL 253
           +T  C    N+ NN T E+   N + K+    KD+    H+ ++K  V   N T +S++
Sbjct: 126 VTLNCIDVKNSTNNNTEEATITNCSFKVPTELKDKTETVHTLFYKLDVVPLNVTNNSSI 184



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>DMXL1_MOUSE (Q6PNC0) Protein DmX-like 1 (X-like 1 protein)|
          Length = 3013

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 127 VIQIVAATCYSNCCGPITHVNCPNRCANFGNEFNTECEP 11
           V  ++   C  N C        PN C  +G++ N  CEP
Sbjct: 249 VCNVLLTCCKDNVCRLWVETFLPNDCFLYGSDCNHWCEP 287



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>WGRTX_GRASP (P60590) Omega-grammotoxin SIA (Omega-GrTx SIA) (Omega-GsTx SIA)|
           (Omega-GTX SIA)
          Length = 36

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 176 CVIFWV*C*QNQTRVFCYSNCCSHMLFKLLRPHNAC 69
           CV FW  C Q        S+CC H+  K   P N C
Sbjct: 2   CVRFWGKCSQT-------SDCCPHLACKSKWPRNIC 30


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,260,352
Number of Sequences: 219361
Number of extensions: 782534
Number of successful extensions: 1795
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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