ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1383_THEVO (Q978N2) UPF0103 protein TV1383 28 6.1

>Y1383_THEVO (Q978N2) UPF0103 protein TV1383|
          Length = 269

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 244 SLQACRFKIIAFLPVLRTEIFSRYCCLNHSKKGD 143
           ++ AC +  IA L ++  +I ++   LNHS  GD
Sbjct: 216 NVTACGYGAIAILMIIAKKIGAKISLLNHSNSGD 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,649,085
Number of Sequences: 219361
Number of extensions: 529041
Number of successful extensions: 959
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top