ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4... 44 0.23
2gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosom... 40 3.6
3gb|AC115898.22| Mus musculus chromosome 7, clone RP24-444C13, co... 40 3.6
4gb|BC060240.1| Mus musculus cDNA sequence AK122525, mRNA (cDNA c... 40 3.6
5gb|AC113001.9| Mus musculus chromosome 7, clone RP23-184M4, comp... 40 3.6
6gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome... 40 3.6
7gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome... 40 3.6
8emb|AL355586.27| Human DNA sequence from clone RP11-59I9 on chro... 40 3.6
9ref|NM_199028.1| Mus musculus cDNA sequence AK122525 (AK122525),... 40 3.6
10emb|AL731711.11| Mouse DNA sequence from clone RP23-55A17 on chr... 40 3.6

>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence
          Length = 160858

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 2      catcaaagaaaattacgagatcttgt 27
              |||||||||||||||| |||||||||
Sbjct: 100333 catcaaagaaaattacaagatcttgt 100358



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>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete sequence
          Length = 210846

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     gcagcgcacggacacacaca 64
              ||||||||||||||||||||
Sbjct: 122024 gcagcgcacggacacacaca 122005



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>gb|AC115898.22| Mus musculus chromosome 7, clone RP24-444C13, complete sequence
          Length = 177754

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   cacggacacacacatacacg 70
            ||||||||||||||||||||
Sbjct: 9162 cacggacacacacatacacg 9143



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>gb|BC060240.1| Mus musculus cDNA sequence AK122525, mRNA (cDNA clone MGC:77961
          IMAGE:6856073), complete cds
          Length = 5915

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 45 gcagcgcacggacacacaca 64
          ||||||||||||||||||||
Sbjct: 38 gcagcgcacggacacacaca 57



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>gb|AC113001.9| Mus musculus chromosome 7, clone RP23-184M4, complete sequence
          Length = 206940

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     cacggacacacacatacacg 70
              ||||||||||||||||||||
Sbjct: 142739 cacggacacacacatacacg 142720



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>gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome 6, complete sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     gcacggacacacacatacac 69
              ||||||||||||||||||||
Sbjct: 149124 gcacggacacacacatacac 149143



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>gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome 10, complete sequence
          Length = 185398

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    gcagcgcacggacacacaca 64
             ||||||||||||||||||||
Sbjct: 47775 gcagcgcacggacacacaca 47756



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>emb|AL355586.27| Human DNA sequence from clone RP11-59I9 on chromosome 6q16.3-21 Contains
              two novel genes, the 3' end of the C6orf210 gene for
              chromosome 6 open reading frame 210 and three CpG islands,
              complete sequence
          Length = 185311

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     gcagcgcacggacacacaca 64
              ||||||||||||||||||||
Sbjct: 124224 gcagcgcacggacacacaca 124205



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>ref|NM_199028.1| Mus musculus cDNA sequence AK122525 (AK122525), mRNA
          Length = 5915

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 45 gcagcgcacggacacacaca 64
          ||||||||||||||||||||
Sbjct: 38 gcagcgcacggacacacaca 57



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>emb|AL731711.11| Mouse DNA sequence from clone RP23-55A17 on chromosome X, complete
              sequence
          Length = 209999

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     gcacggacacacacatacac 69
              ||||||||||||||||||||
Sbjct: 127305 gcacggacacacacatacac 127286


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,057,167
Number of Sequences: 3902068
Number of extensions: 3057167
Number of successful extensions: 199639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 199605
Number of HSP's gapped (non-prelim): 34
length of query: 276
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 254
effective length of database: 17,147,199,772
effective search space: 4355388742088
effective search space used: 4355388742088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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