>GYS2_HUMAN (P54840) Glycogen [starch] synthase, liver (EC 2.4.1.11)|
          Length = 703

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 238 RFGVIILYPPTTRSYSYTKPLAAPPLP 318
           +F V +  PPTT  + Y +P + PP P
Sbjct: 620 KFHVELTSPPTTEGFKYPRPSSVPPSP 646

>CYSG_BUCAI (P57500) Siroheme synthase [Includes: Uroporphyrin-III|
           C-methyltransferase (EC 2.1.1.107) (Urogen III
           methylase) (SUMT) (Uroporphyrinogen III methylase)
           (UROM); Precorrin-2 dehydrogenase (EC 1.3.1.76);
           Sirohydrochlorin ferrochelatase (EC 4.99.
          Length = 473

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 73  DHYLHKW-ILSRDAYTILQY*ASSKAIWKLQRLCT 174
           D +L+ W ILS  +YT++ Y  + KA++  Q+L T
Sbjct: 362 DGFLNNWSILSDPSYTLVVYMGTLKAVYIAQKLIT 396

>UVRC_CHLAB (Q5L553) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 604

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 229 TVYCSKYMEYVLTNSRIHACTTVATSKWPWS*LSTVV*YKHPVTRSICEDNDH 71
           T Y  + +     N+++HA TT+ +S  P+  L  ++       R  C DN H
Sbjct: 343 TGYGRELLNLAKNNAQVHAETTIQSSALPYEELKKILKSPDYPYRIECYDNAH 395

>UBR1_SCHPO (O60152) Ubiquitin-protein ligase E3 component N-recognin-1 (EC|
            6.-.-.-) (N-end-recognizing protein)
          Length = 1958

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = +3

Query: 87   QMDLVTGCLYYTTVLS*L----QGHLE--VATVVHACILELVS 197
            Q D   G L++T V + +    QG LE  V T +HAC+L L+S
Sbjct: 979  QSDSFVGILWHTIVYAYIYPYDQGKLEGLVNTALHACLLVLMS 1021

>ENV_SRV1 (P04027) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP70; Coat protein GP20]
          Length = 587

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 235 LVTVYCSKYMEYVLTNSRIHACTTVATSKWP 143
           L TV CS Y  Y +TNS    C +  T+  P
Sbjct: 57  LTTVSCSTYTAYSVTNSLKWQCVSTPTTASP 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,599,033
Number of Sequences: 219361
Number of extensions: 852944
Number of successful extensions: 2516
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2513
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)