ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PER_LOXAL (Q25221) Period circadian protein (Fragment) 30 3.1
2TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precur... 29 5.3
3L2AM_DROLE (O96569) Alpha-methyldopa hypersensitive protein (EC ... 28 6.9

>PER_LOXAL (Q25221) Period circadian protein (Fragment)|
          Length = 109

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 153 PKYNHL*HLDN*TKTFNSRRKSFVV---PHE*RVDHGNSSSAESTRALMRHA*STG 311
           P YN L + +N  + FNS+  +  V   PHE    +  S+ A S R+ +RH   +G
Sbjct: 9   PSYNQLNYNENLQRFFNSKPITAPVDVDPHEVEQSYDASTDARSFRSPLRHFEGSG 64



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>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 7   KLIHYQQIAQGTSGVHMYEMTHAKEMKLQPLQMLQPYTVGKHMVEGGEHL 156
           KL+ Y+ + QGT   H++E +   E  L+PL   Q  T+   +  G E+L
Sbjct: 659 KLLVYEYMPQGTLSRHLFEWS---EEGLKPLLWKQRLTLALDVARGVEYL 705



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>L2AM_DROLE (O96569) Alpha-methyldopa hypersensitive protein (EC 4.1.1.-)|
           (Fragment)
          Length = 439

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 143 PSTMCFPTVYGCNICKG*SFISLAWVISYICT 48
           P+++ +P++ G  +  G S I  +W+ S  CT
Sbjct: 10  PTSVSYPSIVGEMLASGFSIIGFSWICSPACT 41


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,900,097
Number of Sequences: 219361
Number of extensions: 1194408
Number of successful extensions: 2064
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2064
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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