ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LATA_LATMA (P23631) Alpha-latrotoxin precursor (Alpha-LTX) 30 2.2
2RK20_LOTJA (Q9BBR0) Chloroplast 50S ribosomal protein L20 28 8.5

>LATA_LATMA (P23631) Alpha-latrotoxin precursor (Alpha-LTX)|
          Length = 1401

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 55  KVNSGAVQLHYQNFKGKGKALHMLVKGD 138
           K NSGA  LH   FKGK +A  +L+  +
Sbjct: 792 KTNSGATPLHLATFKGKSQAALILLNNE 819



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>RK20_LOTJA (Q9BBR0) Chloroplast 50S ribosomal protein L20|
          Length = 120

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 132 RGLTASFHPAGSGPNDKKKQLYF 200
           RGL  S   AG G NDKKK +Y+
Sbjct: 57  RGLWISRINAGIGDNDKKKNIYY 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,096,372
Number of Sequences: 219361
Number of extensions: 442184
Number of successful extensions: 1008
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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